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Marathe , N.P. and Shetty , S.A. and Shouche, Y.S. and Larsson, D.G. (2016) Limited Bacterial Diversity within a Treatment Plant Receiving Antibiotic-Containing Waste from Bulk Drug Production. PLoS One. , 11 (11). e0165914-e0165914.

Mahale , K.N. and Paranjape, P.S. and Marathe , N.P. and Dhotre, D.P. and Chowdhury, S. and Shetty, S.A. and Sharma, K. and Tuteja, U. and Sharma , A. and Batra , H.V. and Shouche , Y.S. (2014) Draft Genome Sequences of Yersiniapestis Strains from the 1994 Plague Epidemic of Surat and 2002 Shimla Outbreak in India. Indian Journal of Microbiology, 54 (4). pp. 480-482.

Marathe , N.P. and Shetty , S.A. and Lanjekar , V.B. and Rasane , M.H. and Ranade , D.R. and Shouche , Y.S. (2014) Genome sequencing of multidrug resistant novel Clostridium sp. BL8 reveals its potential for pathogenicity. Gut Pathogens , 6 (30). pp. 1-5.

Shetty , S.A. and Marathe, N.P. and Lanjekar , V. and Ranade , D. and Shouche , Y.S. (2013) Comparative Genome Analysis of Megasphaera sp. Reveals Niche Specialization and Its Potential Role in the Human Gut. PLoS One, 8 (11). e79353-e79353.

Shetty , S.A. and Marathe , N.P. and Munot , H. and Antony, C.P. and Dhotre, D.P. and Murrell , J.C. and Shouche, Y.S. (2013) Draft Genome Sequence of Methylophaga lonarensis MPLT, a Haloalkaliphilic (Non-Methane-Utilizing) Methylotroph. Genenome Annuance, 1 (3). e00202-e002013. ISSN May/June 2013 Volume 1 Issue 3 e00202-13

Shetty , S.A. and Marathe, N.P. and Shouche , Y.S. (2013) Opportunities and challenges for gut microbiome studies in the Indian population. Microbiome , 1 (24).