Kajale, S. and Deshpande, N. and Lodha, T. and Shouche, Y. and Sharma, A. (2022) Natronococcus pandeyae sp. nov., a Novel Haloarchaeon from Sambhar Salt Lake. Current Microbiology. 2022 Jan ; 79 : 51. . pp. 79-51.

Jani , K. and Bandal , J. and Shouche, Y. and Shafi , S. and Azhar, EI. and Zumla, A. and Sharma, A. (2021) Extended Ecological Restoration of Bacterial Communities in the Godavari River During the COVID-19 Lockdown Period: a Spatiotemporal Meta-analysis. Microbial Ecology., 82 (2). pp. 365-376. ISSN 2021 Aug;82(2):365-376.

Karade, S. and Sen, S. and Shergill , SPS. and Jani, K. and Shouche , Y. and Gupta , RM. (2021) Whole genome sequence of colistin-resistant Escherichia coli from western India. Medical Journal of Armed Forces India. , 77 (3). pp. 297-301.

Rahi , P. and Khairnar, M. and Hagir, A. and Narayan, A. and Jain , KR. and Madamwar , D. and Pansare, A. and Shouche, Y. (2021) Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae. Archives of Microbiology., 203. 3591-3604 .

Assad , R. and Reshi, ZA. and Mir , SH. and Rashid , I. and Shouche, Y. and Dhotre, D. (2021) Chapter 17 - Bioprospecting appraisal of Himalayan pindrow fir for pharmacological applications. In: Phytomedicine : A Treasure of Pharmacologically Active Products from Plants. Elsevier, pp. 461-482.

Assad, R. and Reshi , ZA. and Rashid , I. and Shouche , Y. and Dhotre , D. (2021) Role of Ectomycorrhizal Biotechnology in Pesticide Remediation. In: Bioremediation and Biotechnology. Springer Nature, pp. 315-330.

Kajale, S. and Deshpande, N. and Shouche, Y. and Sharma, A. (2020) Cultivation of DiverseMicroorganisms from Hypersaline Lake and Impact of Delay in Sample Processing on Cell Viability. Current Microbiology.

Kajale, S. and Deshpande, N. and Pali, S. and Shouche, Y. and Sharma, A. (2020) Natrialba swarupiae sp.nov., a halophilic archaeon isolated from a hypersaline lake in India. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY.

Joshi, A. and Thite, S. and Dhotre, D. and Moorthy, M. and Joseph, N. and Ramana, V.V. and Shouche, Y. (2019) Nitrincola tapanii sp. nov., a novel alkaliphilic bacterium from An Indian Soda Lake. Intrnational Journal Of Systematic and Evolutionary Microbiology.

Jani, K. and Bandal, J. and Rale, V. and Shouche, Y. and Sharma, A. (2019) Antimicrobial resistancepattern of microorganisms isolated and identified from Godavari River across the mass gathering event. p. 121.

Chaudhari, D. and Dhotre, D. and Agarwal, D. and Gondhali, A. and Nagarkar, A. and Lad, V. and Patil, U. and Juvekar, S. and Sinkar, V. and Shouche, Y. (2019) Understanding the association between the humangut, oral and skin microbiome and the Ayurvedic concept of prakriti. Journal of Bioscience, 44 (5). p. 112.

Jani, K. and Feng, G.D. and Zhu, H.H. and Prakash, O. and Bandal, J. and Rale, V and Shouche, Y. and Sharma, A. (2019) Chakrabartia godavariana gen. nov., sp. nov., a novel member of the familySphingomonadaceae isolated from the Godavari River, India. International Journal of Systematic and Evolutionary Microbiology , 69 (8).

Kumar, S. and Suyal, D.C. and Yadav, A. and Shouche, Y. and Goel, R. (2019) Microbial diversity and soil physiochemical characteristic of higher altitude. PLoS One., 14 (3). p. 1371.

Sharma, A. and Jani, K. and Thite, V. and Dhar, S.K. and Shouche, Y. (2019) Geochemistry Shapes Bacterial Communities and their Metabolic Potentials in Tertiary Coalbed. Geomicrobiology Journal, 36 (2). pp. 179-187.

Jani, K. and Dhotre , D. and Bandal , J. and Shouche, Y. and Suryavanshi, M. and Rale , V and Sharma , A. (2018) World's Largest Mass Bathing Event Influences the Bacterial Communities of Godavari, a Holy River of India. Microbial Ecology , 75 (3). pp. 706-718.

Sha, S.P. and Suryavanshi, M.V. and Jani, K. and Sharma, A. and Shouche, Y. and Tamang, J.P. (2018) Diversity of Yeasts and Molds by Culture-Dependent and Culture-Independent Methods forMycobiome Surveillance of Traditionally Prepared Dried Starters for theProduction of Indian Alcoholic Beverages. Front Microbiol, 26 (9). p. 2237.

Debbarma, P. and Zaidi, M.G.H. and Kumar, S. and Raghuwanshi, S. and Yadav, A. and Shouche, Y. and Goel, R. (2018) Selection of potential bacterial strains to develop bacterial consortia for theremediation of e-waste and its in situ implications. Waste Manag, 79. pp. 526-536.

Behera, P. and Mahapatra, M. and Seuylemezian, A. and Vaishampayan, P. and Ramana, V.V. and Joseph, N. and Joshi, A. and Shouche, Y. and Suar, M. and Pattnaik, A.K. and Rastogi, G. (2018) Taxonomic description anddraft genome of Pseudomonas sediminis sp. nov., isolated from the rhizosphericsediment of Phragmites karka. Journal of Microbiolgy, 56 (7). pp. 458-466.

Sharma, A. and Jani, K. and Feng, G.D. and Karodi, P. and Vemuluri, V.R. and Zhu, H.H. and Shivaji, S. and Thite, V. and Kajale, S. and Rahi, P. and Shouche, Y. (2018) Subsaxibacter sediminis sp. nov., isolated fromArctic glacial sediment and emended description of the genus Subsaxibacter. International Journal of Systematic and Evolutionary Microbiology, 68. pp. 1678-1682.

Jani , K. and Sharma , A. and Rale , V. and Shouche , Y. (2017) Impact of Microbiome Studies on Human Healthcare.  Indian Journal of Public Health Research and Development, 8 (4). 1009 .

Sha , S.P. and Jani , K. and Sharma , A. and Sharma , A. and Anupma , A. and Pradhan , P. and Shouche , Y. (2017) Analysis of bacterial and fungal communities in Marcha and Thiat, traditionally preparedamylolytic starters of India. Sci Rep. , 7 (1). p. 10967.

Gaikwad, S. and Warudkar , A. and Shouche , Y. (2017) Efficacy of DNA barcoding for the species identification of spiders from Western. Mitochondrial DNA A 28(5):638-644., 28 (5). pp. 638-644.

Agarwal , D. and Dhotre, D. and Patil , R. and Shouche , Y. and Juvekar , S. and Salvi , S. (2017) Potential ofHealth and Demographic Surveillance System in Asthma and Chronic ObstructivePulmonary Disease Microbiome Research. Front Public Health. , 5. p. 196.

Tomer , S. and Suyal , D.C. and Shukla, A. and Rajwar , J. and Yadav, A. and Shouche , Y. and Goel , R. (2017) Isolation and characterization of phosphate solubilizing bacteria from Western Indian Himalayan soils. 3 Biotech (17). p. 7.

Kulkarni , G. and Gohil , K. and Misra , V. and Kakrani , A.L. and Misra , S.P. and Patole, M. and Shouche , Y. and Dharne , M. (2017) Multilocus sequence typing of Ochrobactrum spp. isolated from gastric niche. Journal of Infection and Public Health, 10 (2). pp. 201-210.

Suyal , D.C. and Kumar , S. and Yadav , A. and Shouche , Y. and Goel , R. (2017) Cold Stress and Nitrogen Deficiency Affected Protein Expression of Psychrotrophic Dyadobacter psychrophilus B2 and Pseudomonas jessenii MP1. Frontier Microbiology.

Yadav , A. and Thorat , V. and Deokule , S. and Shouche , Y. and Prasad , D.T. (2017) New subgroup 16SrXI-F phytoplasma strain associated with sugarcane grassy shoot (SCGS) disease in India. Int J Syst Evol Microbiol. 2017 Feb;67(2):374-378, 67 (2). pp. 374-378.

Joshi, A. and Thite , S. and Kulkarni, G. and Dhotre, D. and Joseph, N. and Venkata Ramana, V. and Polkade , A. and Shouche, Y. (2016) Nitrincola alkalisediminis sp. nov., an alkaliphilic bacterium isolated from an alkaline lake. March 2016 66: 1254-1259, doi: 10.1099/ijsem.0.000868 , 66. pp. 1254-1259.

Hill, C.L. and Sharma , A. and Shouche , Y. and Severson , D.W. (2014) Dynamics of midgut microflora and dengue virus impact on life history traits in Aedes aegypti. Acta Tropica, 140. pp. 151-157.

Tembe , S. and Shouche , Y. and Ghate , H.V. (2014) DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India. Meta Gene. 2014 Oct 10;2:737-45., 10 (2). pp. 737-745.

Jiang, X. and Peery , A. and Hall , A.B. and Sharma, A. and Chen, X.G. and Waterhouse , R.M. and Komissarov , A. and Riehle , M.M. and Shouche , Y. and Sharakhova , M.V. and Lawson , D. and Pakpour , N. and Arensburger , P. and Davidson , V.L. and Eiglmeier , K. and Emrich , S and George , P. and Kennedy , R.C. and Mane , S.P. and Maslen , G. and Oringanje , C. and Qi Y, Y. and Settlage , R. (2014) Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi. Gnome Biology , 15 (9). p. 459.

Rutgersson , C and Fick , J. and Marathe , N. and Kristiansson , E. and Janzon, A. and Angelin , M. and Johansson, A. and Shouche, Y. and Flach , C.F. and Larsson, D.G. (2014) Fluoroquinolones and qnr genes in sediment, water, soil, and human fecal flora in an environment polluted by manufacturing discharges. Environment Science Technology , 48 (14). pp. 7825-7832. ISSN 48(14):7825-32.

Sharma , A. and Shouche, Y. (2014) Microbial Culture Collection (MCC) and International Depositary Authority (IDA) at National Centre for Cell Science,. Indian J. Microbiol. 2014 Jun;54(2):129-33. , 54 (2). pp. 129-133.

Kulkarni , G. and Dhotre , D. and Dharne, M. and Misra , V. and Chowdhury , S. and Misra, S. and Patole, M. and Shouche , Y. (2013) Draft genome of Ochrobactrum intermedium strain M86 isolated from non-ulcer dyspeptic individual from India. Gut Pathogene, 5 (7). pp. 1-7.