Article

Aadil , KR and Nathani , A and Sharma , CS and Lenka, N and Gupta P, P (2019) Investigation of poly(vinyl) alcohol-gellan gum based nanofiber as scaffolds for tissue engineering applications. Journal of Drug Delivery Science and Technology (54). p. 101276.

Adebayo , A.S. and Suryavanshi , M.A. and Bhute , S. and Agunloye , A.M. and Isokpehi , R.D. and Anumudu , C.L. and Shouche , Y.S. (2017) The microbiome in urogenital schistosomiasis and induced bladderpathologies. PLoS Negl Trop Dis. , 11 (11). e0006067.

Adebayo , A.S. and Suryavanshi , M.V. and Bhute , S. and Agunloye , A.M. and Isokpehi , R.D. and Anumudu , C. and Shouche , Y.S. (2017) The microbiome in urogenital schistosomiasis and induced bladder pathologies. PLoS Negl Trop Dis., 11 (8). e0005826..

Adhikari , P and Jain , R and Sharma , A and Pandey , A (2021) Plant Growth Promotion at Low Temperature by Phosphate-Solubilizing Pseudomonas Spp. Isolated from High-Altitude Himalayan Soil. Microbial Ecology.

Agarwal, DM. and Dhotre, DP. and Kumbhare, SV. and Gaike, AH. and Brashier, BB. and Shouche, YS. and Juvekar, SK. and Salvi , SS. (2021) Disruptions in oral and nasal microbiota in biomass and tobacco smoke associated chronic obstructive pulmonary disease. Archives of Microbiology. , 203 (5). pp. 2087-2099. ISSN 2021 Jul;203(5):2087-2099.

Agarwal , D. and Dhotre, D. and Patil , R. and Shouche , Y. and Juvekar , S. and Salvi , S. (2017) Potential ofHealth and Demographic Surveillance System in Asthma and Chronic ObstructivePulmonary Disease Microbiome Research. Front Public Health. , 5. p. 196.

Ahanger , S.H. and Günther , K. and Weth, O. and Bartkuhn , M. and Bhonde , R.R. and Shouche , Y.S. and Renkawitz , R. (2014) Ectopically tethered CP190 induces large-scale chromatin decondensation. Scientific Report, 4 (3917). pp. 1-10. ISSN 4 : 3917

Ahanger , SH and Srinivasan , A and Vasanthi , D and Schouche, Y.S. and Mishra, R.K. (2013) Conserved boundary elements from the Hox complex of mosquito, Anopheles gambiae. Nucleic Acids Research, 41 (2). pp. 804-816. ISSN 2013, Vol. 41, No. 2

Ahanger , S.H and Shouche , Y.S. and Mishra, R.K (2013) Functional sub-division of the Drosophila genome via chromatin looping The emerging importance of CP190. Nucleus , 4 (2). pp. 115-122.

Aher , MN and Erande , ND and Kumar, VA and Fernandes M, M and Gonnade, RG (2020) Influence of fluorine substitution on the molecular conformation of 3'-deoxy-3'-fluoro-5-methyluridine. Acta Crystallographica Section C: Structural Chemistry . , 76 (4). pp. 346-352. ISSN 2020 Apr 1;76(Pt 4):346-352.

Alai, S and Ghattargi , VC and Gautam, M and Patel, K and Pawar, SP and Dhotre, DP and Shaligram , U and Gairola , S (2020) Comparative genomics of whole-cell pertussis vaccine strains fromIndia. BMC Genomics. 2020 May 7;21(1):345. , 21 (1). p. 345.

Alai , S and Gautam, M and Palkar, S and Oswal, J and Gairola , S and Dhotre, D (2022) Characterization of Bordetella pertussis Strains Isolated from India. Pathogens , 11 (7). p. 794.

Anand , S and Om Prakesh, P and Kalia, VC (2021) The alphabet of the elementary microbiology: Revisited. Journal of Microbiology, 61 (4). pp. 397-400.

Antony , P.C and Kumaresan , D and Hunger , S and Drake, H.L and Murrell , J and Shouche , Y.S. (2013) Microbiology of Lonar Lake and other soda lakes. The ISME Journal , 7. pp. 468-476.

Apte , S and Bhutda , S and Ghosh, S and Sharma, K and Santra, MK and Neill, DR and Banerjee , A (2023) An innate pathogen sensing strategy involving ubiquitination of bacterial surface proteins. Science Advances, 9 (12). p. 1851.

Atre , A.N. and Mehta , A. and Chandorkar , P.R. and Patole , M.S. and Diwanay, S.S. and Shah , S.R. and Modak , M.S. (2016) Uptake of clinical yeast isolates by human epithelial cell line Internalisation d’isolats cliniques de levures par des cellules épithéliales humaines. Journal of Medical Mycology , 26 (3). pp. 187-192.

Azhar, EI and Hui, DS and McCloskey, B and El-Kafrawy , SA and Sharma, A and Maeurer , M and Shui-Shan Lee, S and Zumla, A (2022) The Qatar FIFA World Cup 2022 and camel pageant championships increase risk of MERS-CoV transmission and global spread. Lancet.

Bagade , A and Nandre , V and Paul , D and Patil , Y and Sharma , N and Giri , A and Kodam , K (2020) Characterisation of hyper tolerant Bacillus firmus L-148 for arsenic oxidation. Environmental Pollution (261). p. 114124.

Bagchi , S.N. and Dubey , N. and Singh , P. (2017) Phylogenetically distant clade of Nostoc-like taxa with the description of Aliinostoc gen. nov. and Aliinostoc morphoplasticum sp. nov. Int J Syst Evol Microbiol, 67 (9). pp. 3329-3339.

Banskar, S. and Bhute, S.S. and Suryavanshi , M.V. and Punekar, S. and Shouche, Y.S. (2016) Microbiome analysis reveals the abundance of bacterial pathogens in Rousettus leschenaultii guano. Scientific Report, 15 (6). p. 36948.

Banskar S, S. and Mourya DT, D.N. and Shouche YS, Y.S. (2016) Bacterial diversity indicates dietary overlap among bats of different feeding habits. Microbiol Res., 182. pp. 99-108.

Bashir, I. and War, AF. and Rafiq , I. and Reshi, ZA. and Rashid, I. and Shouche , YS. (2021) Phyllosphere microbiome: Diversity and functions. Microbiological Research, 254. 126888. .

Bayal, N and Nagpal , S and Haque, MM and Patole, MS and Shouche, Y and Mande, SS (2021) Structural aspects of lesional and non-lesional skin microbiota reveal keycommunity changes in leprosy patients from India. Scientific Reports., 11 (1). p. 3294.

Bhat, S and Yadav , V and Kirdat, K and Thorat, V and Tiwarekar, B and Yadav , A and Janardhana , G (2020) Molecular detection and identification of a strain related to ‘Candidatus Phytoplasma australasia’ in marigold in India. Phytopathogenic Mollicutes. , 10 (1). pp. 82-88.

Bhat , S and Kepu, S and Kirdat, K and Yadav, A and Natarajamurthy, SGJ (2021) Molecular identification of 16SrII-D phytoplasmas infecting Crossandra infundibuliformis in India. Phytopathogenic Mollicutes., 11 (1). pp. 23-30.

Bhat , S. and Jagadeeshaprasad , M.G. and Patil , Y.R. and Shaikh , M.L. and Regin, B.S. and Mohan , V. and Giri , A.P. and Balasubramanyam , M3. and Boppana , R. and Kulkarni , M.J. (2016) Proteomic Insight Reveals Elevated Levels of Albumin in Circulating Immune Complexes in Diabetic Plasma. Mol Cell Proteomics., 15 (6). pp. 2011-2020.

Bhute , S and Pande, P. and Shetty , S.A. and Shelar , R. and Mane, S. and Kumbhare, S.V. and Gawali , A. and Makhani , H. and Navandar, M. and Dhotre , D. and Lubree, H. and Agarwal, D. and Patil, R. and Ozarkar , S. and Ghaskadbi, S. and Yajn , C. (2016) MolecularCharacterizationandMeta-AnalysisofGutMicrobialCommunitiesIllustrateEnrichmentofPrevotellaandMegasphaerainIndianSubjects. Frontiers in Microbiology : Microbial Symbioses (7). e660.

Bhute , S.S. and Suryavanshi , M.V. and Joshi , S.M. and Yajnik , C.S. and Shouche , Y.S. and Ghaskadbi , S.S. (2017) Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes. Front Microbiol. , 14 (8). p. 214.

Bhute , S.S. and Suryavanshi , M.V. and Joshi , S.M. and Yajnik , C.S. and Shouche , Y.S. and Ghaskadbi , S.S. (2017) Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes. Front. Microbiol..

Biju, SD and Garg, SG and Chandrakasan, S and Thammachoti, P and Ren , J and Gopika, C and Bisht, J and Hamidy , A and Shouche, YS (2020) New insights on the systematics and reproductive behaviour in tree frogs of the genus Feihyla, with description of a new related genus from Asia (Anura, Rhacophoridae). Zootaxa, 12 (1). p. 4878.

Biju , S.D. and Senevirathne , G. and Garg , S. and Mahony, S. and Kamei , R.G. and Thomas, A. and Shouche, Y. and Raxworthy , C. and Meegaskumbura , M. and Van Bocxlaer , I. (2016) Frankixalus, a New Rhacophorid Genus of Tree Hole Breeding Frogs with Oophagous Tadpoles. PLoS One. , 11 (1). e0145727.

Bodkhe, R. and Marietta, EV. and Balakrishnan, B. and Luckey, DH. and Horwath , IE. and Shouche, YS. and Taneja, V. and Murray, JA. (2021) Human gut-derived commensal suppresses generation of T-cell response to gliadin in humanized mice by modulating gut microbiota. Anaerobe, 68. p. 1022237.

Chandel , K. and Parikh, R.Y. and Mendki, M.J. and Shouche, Y.S. and Veer, V. (2015) Isolation andcharacterization of Vagococcus sp from midgut of Culex quinquefasciatus (Say)mosquito. J Vector Borne Dis. , 52 (1). pp. 52-57.

Chandwani , S and Dewala, S and Chavan, SM and Paul , D and Pachaiappan, R and Gopi , M and Amaresan, N (2023) Complete genome sequencing of Bacillus subtilis (CWTS 5), a siderophore-producing bacterium triggers antagonistic potential against Ralstonia solanacearum. Journal of Applied Microbiology, 134 (4).

Charan, S.S and Pawar, K.D. and Gavhale , S.D. and Tikhe , C.V. and Charan , N.S. and Angel , B. and Joshi , V. and Patole, M.S. and Shouche , Y.S. (2016) Comparative analysis of midgut bacterial communities in three aedine mosquito species from dengue-endemic and non-endemic areas of Rajasthan, India. Med Vet Entomol. , 30 (3). pp. 264-277.

Charan , S.S. and Pawar , K.D. and Severson , D.W. and Patole , M.S. and Shouche , Y.S. (2013) Comparative analysis of midgut bacterial communities of Aedes aegypti mosquito strains varying in vector competence to dengue virus. Parasitol Res. , 112 (7). pp. 2627-2637.

Chatterjee , B. and Banoth , B. and Mukherjee , T. and Taye , N. and Vijayaragavan , B. and Chattopadhyay , S. and Gomes , J. and Basak , S. (2016) Late-phase synthesis of IκBα insulates the TLR4-activated canonical NF-κB pathway from noncanonical NF-κB signaling in macrophages. Sci. Signal. , 9 (457). ra120.

Chaudhar, D. and Rangappa, K. and Das, A. and Layek, J. and Basavaraj , S. and Kandpal , BK. and Shouche , YS. and Rahi , P. (2020) Pea (Pisum sativum l.) Plant Shapes Its Rhizosphere Microbiome for Nutrient Uptake and Stress Amelioration in Acidic Soils of the North-East Region of India. Frontiers in Microbiology. 2020 Jun 3;11:968., 11. p. 968.

Chaudhari , A.U. and Paul , D. and Dhotre , D. and Kodam , K.M. (2017) Effective biotransformation and detoxification of anthraquinone dye reactive blue 4 by using aerobic bacterial granules. Water Research, 122. pp. 603-613333.

Chaudhari , D and Kiran, S and Choudhary, A and Silveira, K and Narwade, N and Dhotre , D and Khazir , J and Mir , BA and Shouche, YS and Rahi, P (2023) Prokaryotic communities adapted to microhabitats on the Indian lotus (Nelumbo nucifera) growing in the high-altitude urban Dal Lake. International Microbiology, 26 (2). pp. 257-267.

Chaudhari , DS and Dhotre, DP and Jani, K and Sharma, A and Singh, Y and Shouche, YS and Rahi, P (2020) Bacterial Communities Associated with the Biofilms Formed in High-Altitude Brackish Water Pangong Tso Located in the Himalayan Plateau. Current Microbiology , 77 (12). pp. 4072-4084.

Chaudhari , DS and Dhotre , DP and Agarwal, DM and Gaike, AH and Bhalerao , D and Jadhav, P and Mongad, D and Lubree, H and Sinkar, VP and Patil , UK and Salvi , S and Bavdekar, A and Juvekar, SK and Shouche, YS (2020) Gut, oral and skin microbiome of Indian patrilineal families reveal perceptibleassociation with age. Scientific Report. , 10 (1). 5685. .

Chaudhry, R and Antony , B and Batra , P and Prakash. , O (2022) Editorial on the first webinar of the Anaerobic Forum of India. Anaerobe. 2022 Dec.; 78: 102650., 78. p. 102650.

Chauhan, M and Kimothi, A and Sharma, A and Pandey, A (2023) Cold adapted Pseudomonas: ecology to biotechnology. Frontiers in Microbiology : Sec. Extreme Microbiology, 14. p. 1218708.

Chauhan, NS and Joseph, N and Shaligram, S and Chavan, N and Joshi , A and Dhotre , D and Lodha, T and Shouche, YS (2022) Paenibacillus oleatilyticus sp. nov., isolated from soil. Archives of Microbiology. pp. 204-516.

Chavadar , M. and Saraf, A. and Suradkar, A. and Mishra, D. and Kumar, N. and Singh, P. (2021) Constrictifilumkaradense gen. et sp. nov., a new Nostocalean genus from Maharashtra, India. FEMS Microbiology Letters., 368 (11). fnab057.

Chopra, A and Mongad, D and Satpute, S and Mazumder, PB and Rahi, P (2023) Quorum sensing activities and genomic insights of plant growth-promoting rhizobacteria isolated from Assam tea. World Journal of Microbiology and Biotechnology , 39 (6). p. 160.

Chopra , A and Bobate , S and Rahi , P and Banpurkar , A and Mazumder , PB and Satpute , S (2020) Pseudomonas aeruginosaRTE4: A Tea Rhizobacterium With Potential for Plant Growth Promotion and Biosurfactant Production. Frontiers in Bioengineering and Biotechnology , 8. p. 861.

Chopra , A and Vandana , UK and Rahi , P and Satpute , S and Mazumder , PB (2020) Plant growth promoting potential of Brevibacterium sediminis A6 isolated from the tea rhizosphere of Assam, India. Biocatalysis and Agricultural Biotechnology., 27. p. 101610.

Choudhury, A. and Mohammad, T. and Samarth, N. and Hussain, A. and Rehman , MT. and Islam, A. and Alajmi , MF. and Singh, S. and Hassan, MI. (2021) Structural genomics approach to investigate deleteriousimpact of nsSNPs in conserved telomere maintenance component 1. Scientific Report., 11 (1). p. 10202.

Choudhury, S.R. and More , T.H. and Chattopadhyay, R. and Lodh, I. and Ray, C.D. and Bose, G. and Sarkar, H.S. and Chakravarthy , B. and Rapole, S. and Chaudhury K., K. (2017) Polycystic ovary syndrome in Indian women: a mass spectrometry based serum metabolomics approach. Metabolomics, 13 (115).

Dar, MA and Pawar, KD and Rajput, BP and Rahi, P and Pandit, RS (2019) Purification of a cellulase from cellulolytic gut bacterium, Bacillus tequilensis G9 and its evaluation for valorization of agro-wastes into added value byproducts. Biocatalysis and Agricultural Biotechnology (20). p. 101219.

Dar , MA and Dhole, NP and Xie, R and Pawar, KD and Ullah, K and Rahi, P and Pandit, RS and Sun, J (2021) Valorization Potential of a Novel Bacterial Strain, Bacillus altitudinis RSP75, towards Lignocellulose Bioconversion: An Assessment of Symbiotic Bacteria from the Stored Grain Pest, Tribolium castaneum. Microorganisms, 9 (9). p. 1952.

Dastager, S.G. and Mawlankar, R. and Krishnamurthi , S. and Ramana, V.V. and Tang, S.K. and Joseph , N. and Shouche, Y.S. (2014) Rhodococcus enclensis sp. nov., a novel member of the genus Rhodococcus. 2014 Aug;64(Pt 8):2693-9. , 64 (8). pp. 2693-2696.

Dastager, S.G. and Mawlankar, R. and Srinivasan, K. and Tang, S.K. and Lee , J.C. and Ramana, V.V. and Shouche, Y.S. (2014) Fictibacillus enclensis sp. nov., isolated from marine sediment. Antonie van Leeuwenhoek, 3. pp. 461-469.

Dastager , S.G. and Mawlankar, R. and Mual , P. and Verma, A. and Krishnamurthi , S. and Joseph , N. and Shouche, Y.S. (2015) Bacillus encimensis sp. nov. isolated from marine sediment. Int J Syst Evol Microbiol. , 65 (5). pp. 1421-1425.

Dastager , S.G. and Mawlankar , R. and Tang , S.K. and Srinivasan , K. and Ramana , V.V. and Shouche, Y.S. (2014) Bacillus enclensis sp. nov., isolated from sediment sample. Antonie van Leeuwenhoek, 105. pp. 199-206.

Devi , SP, and Jani , K, and Sharma , A, and Jha, DK, (2021) Bacterial communities and their bioremediation capabilities in oil-contaminated agricultural soils. Environmental Monitoring and Assessment, 194 (1). p. 9.

Dewala, S and Bodkhe, R and Nimonkar, Y and OM Prakash, OM and Ahuja , V and Makharia , GK and Shouche, YS Human small-intestinal gluten-degrading bacteria and its potential implication in celiac disease. Journal of Bioscience, 48. p. 18.

Dhar , MS (2021) Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India. (INSACOG). Science, 374 (6570). pp. 995-999.

Dhingra, GG. and Saxena , A. and Nigam, A. and Hira , P. and Singhvi, N. and Anand, S. and Kaur, J. and Kaur, J. and Dua, A. and Negi, V. (2021) Microbial World: Recent Developments in Health, Agriculture and Environmental Sciences. Indian Journal of Microbiology. 2021 Mar 29;61(2):1-5. , 61 (2). pp. 1-5.

Dixit , K and Davray, D and Chaudhari, D and Kadam, P and Kshirsagar, R and Shouche , YS and Dhotre, D and Saroj , SD (2021) Benchmarking of 16S rRNA gene databases using known strain sequences. Bioinformation, 17 (3). pp. 377-391.

Gaike , AH and Paul , D and Bhute, S and Dhotre, DP and Pande, P and Upadhyaya, S and Reddy, Y and Sampath, R and Ghosh, D and Chandraprabha, D and Acharya, J and Banerjee, G and Sinkar, VP and Ghaskadbi, SS and Shouche, YS (2020) The Gut Microbial Diversity of Newly Diagnosed Diabetics but Not ofPrediabetics Is Significantly Different from That of Healthy Nondiabetics. mSystems, 5 (2). e00578-19.

Gaikwad, S. and Warudkar , A. and Shouche , Y. (2017) Efficacy of DNA barcoding for the species identification of spiders from Western. Mitochondrial DNA A 28(5):638-644., 28 (5). pp. 638-644.

Gaikwad , S.S. and Shouche , Y.S. and Gade, W.N. (2017) Deep Sequencing Reveals Highly Variable Gut Microbial Composition of Invasive Fish Mossambicus Tilapia (Oreochromis mossambicus) Collected from Two Different Habitats. Indian Journal of Microbiology, 57 (2). pp. 235-240.

Gaikwad S, S. and Shouche YS, Y.S. and Gade WN, W.N. (2016) Microbial community structure of two freshwater sponges using Illumina MiSeq sequencing revealed high microbial diversity. AMB Express. , 6 (40).

Ganeshprasad, DN and Lone, JK and Jani , K and Shouche, YS and Khan, KA and Sayed, S and Shukry, M and Showket, AD and Mushtaq, M and Sneharani, AH (2022) Gut Bacterial Flora of Open Nested Honeybee, Apis florea. Frontiers in Ecology and Evolution.

Ganji , R. and Dhali , S. and Rizvi , A. and Rapole , S. and Banerjee, S. (2016) Understanding HIV-Mycobacteria synergism through comparative proteomics of intra-phagosomal mycobacteria during mono- and HIV co-infection. Scientific Report. 22060 .

Ghare , U and Narvekar, S and Lodha, T and Mallebhari, R and Dastager, S and Barvkar , VT and Dhotre, D and Karmalkar, NR and Pable, AA (2023) Bacterial Communities and Diversity of Western GhatsSoil: A Study of a Biodiversity Hotspot. Current Microbiology, 80 (4). p. 108. ISSN October 2013, Volume 67, Issue 4, pp 454-459

Ghattargi, V.C. and Kalam, S.H. and Pandit, S.S and Pawar, S.P. and Shouche , Y.S. (2018) Survey of probiotic preparations and labeling practices in Indian market. Indian Journal of Medical Research , 36 (1). pp. 116-118.

Ghattargi , VC and Garg , M and Raina, S and Silva, JD and Pawar, SP and Rahi, P (2019) Assessment of airborne microbial community in Indian cities during the Middle East dust storm. Current Science. , 117 (10). pp. 1693-700.

Ghosh, D.K. and Bhose, S. and Sharma, P. and Warghane, A. and Motghare, M. and Ladaniya, M.S. and Reddy M.K, M.K. and Thorat , Y. and Yadav, A. (2017) First Report of a 16SrXIV Group Phytoplasma Associated With Witches’-Broom Disease of Acid Lime (Citrus aurantifolia) in India. Plant Dieases, 101 (5). p. 831.

Gokhale , K. and Patil , D.P. and Dhotre , D.P. and Dixit , R. and Mendki , M.J. and Patole , M.S. and Shouche , Y.S. (2013) Transcriptome analysis of Anopheles stephensi embryo using expressed sequence tags. Journal of Bioscience, 38 (2). pp. 301-309.

Gonzalez , JM and Puerta-Fernández , E and Santana , MM and Rekadwad B., B (2020) On a Non-Discrete Concept of Prokaryotic Species. Microorganisms, 8 (11). E1723.

Gopal, M. and Bhute , S.S. and Gupta , A. and Prabhu , S.R. and Thomas , G.V. and Whitman, W.B. and Jangid, K. (2017) Changes in structure and function of bacterial communities during coconut leaf vermicomposting. Antonie van Leeuwenhoek. pp. 1-17.

Gujarati , S and Chaudhari, D and Hagir , A and Khairnar, M and Shouche , Y and Rahi, P (2020) Klebsiellaindica sp. nov., isolated from the surface of a tomato. International Journal of Systematic and Evolutionary Microbiology , 70 (5). pp. 3278-3286. ISSN 2020 May;70(5):3278-3286.

Gupta, A and Bhanushali, S and Karyakarte, R and Joshi, S and Das, R and Shouche, Y and Sharma, A (2022) Mycobiome profiling of nasopharyngeal region of SARS-CoV-2 infected individuals. Microbes and Infection. p. 105059.

Gupta, A and Bhanushali , S and Sanap, A and Shekatkar, M and Kharat, A and Raut, C and Bhonde, R and Shouche, Y and Kheur, S and Sharma, A (2022) Oral dysbiosis and its linkage with SARS-CoV-2 infection. Microbiological Research. p. 127055.

Gupta, A and Dutt, V and Sharma, N and Kajale, S and Bhatt, A and Shafi, S and Azhar, E and Zumla, A and Sharma, A (2023) Examining the microbial composition of natural springs in Bhaderwah, Jammu and Kashmir, India. Environmental Monitoring and Assessment, 195. p. 949.

Gupta, A, and Karyakarte, R, and Joshi, S, and Das, R, and Jania, K, and Shouche, YS, and Sharma, A, (2022) Nasopharyngeal microbiome reveals the prevalence of opportunistic pathogens in SARS-CoV-2 infected individuals and their association with host types. Microbes and Infection, 24 (1). p. 104880.

Hasan , S.S. and Singh , S. and Parikh , R.Y. and HDharne, M.S. and Patole , M.S. and Prasad , B.L. and Prasad , B.L. (2008) Bacterial synthesis of copper/copper oxide nanoparticles. J Nanosci Nanotechnol. 2008 Jun;8(6):3191-6, 8 (6). pp. 3191-3196.

Hussain , A and Dar , MS and Bano, N and Hossain, MM and Basit, R and Bhat, AQ and Aga, MA and Ali, S and Hassan , QP and Dar, MJ (2019) Identification of dinactin, a macrolide antibiotic, as a natural product-based small molecule targeting Wnt/β-catenin signaling pathway in cancer cells. Cancer Chemotherapy and Pharmacology , 84 (3). pp. 551-559.

Hussain , A and Hassan , QP and Shouche, YS (2020) New approaches for antituberculosis leads from Actinobacteria. Drug Discovery Today, 25 (12). pp. 2335-2342.

Hussain , A and Patwekar, U and Mongad , DS and Shouche, YS (2022) Strategizing the human microbiome for small molecules: approaches and perspectives. Drug Discovery Today. 2022 Nov 23;103459. (103459).

Imran, M. and Saida, B. and Ghadi, S.C. and Verma, P. and Shouche, Y.S. (2016) The gut-associated Klebsiella sp. of the apple snail produces multiple polysaccharide degrading enzymes. Current Science, 110 (11). pp. 2170-2172.

Inamdar , A and Adhapure , NN and Sharma , R and Sonawane , MS (2019) Aureobasidium tremulum sp. nov. -Fungal Planet 907. Persoonia-Fungal Planet Description Sheets , 42. pp. 330-331.

Jamdhade, M.D. and Pawar, H. and Chavan, S. and Sathe, S. and Umasankar, P.K. and Mahale, K.N. and Dixit , T. and Madugundu, A.K. and Prasad, T.S. and Gowda, H. and Pandey , A. and Patole, M.S. (2015) Comprehensive proteomics analysis of glycosomes from Leishmania donovani. OMICS: A Journal of Integrative Biology, 19 (3). pp. 157-170. ISSN March 2015, 19(3): 157-170

Jangid , K. and Kao, M.H. and Lahamge, A. and Williams, M.A. and Rathbun, S.L. and Whitman, W.B. (2016) K-shuff: A Novel Algorithm for Characterizing Structural and Compositional Diversity in Gene Libraries. PLoS One. , 11 (12). e0167634..

Jani, K and Mahajan, A and Kajale, S and Ashar, A and Sharma, A (2022) Soil bacterial community structure, metabolic adaptations and their functional interactions to abiotic factors in Antarctica. Polish Polar Research, 43 (1). pp. 21-36.

Jani, K. and Dhotre , D. and Bandal , J. and Shouche, Y. and Suryavanshi, M. and Rale , V and Sharma , A. (2018) World's Largest Mass Bathing Event Influences the Bacterial Communities of Godavari, a Holy River of India. Microbial Ecology , 75 (3). pp. 706-718.

Jani , K and Kajale, S and Shetye, M and Palkar , S and Sharma , A (2021) Marisediminicola senii sp. nov. isolated from Queen Maud Land, Antarctica . International Journal of Systematic and Evolutionary Microbiology., 71 (2).

Jani , K. and Bandal , J. and Shouche, Y. and Shafi , S. and Azhar, EI. and Zumla, A. and Sharma, A. (2021) Extended Ecological Restoration of Bacterial Communities in the Godavari River During the COVID-19 Lockdown Period: a Spatiotemporal Meta-analysis. Microbial Ecology., 82 (2). pp. 365-376. ISSN 2021 Aug;82(2):365-376.

Jani , K. and Ghattargi , V. and Pawar , M. and Inamdar , M. and Shouche , A. and Sharma , A. (2017) Anthropogenic Activities Induce Depletion in Microbial Communities at Urban Sites of the River Ganges. Curr Microbiol. . pp. 1352-1355. ISSN 2017 Sep 7. doi: 10.1007/s00284-017-1352-5.

Jani , K. and Khare , K. and Senik , S. and Karodi , P. and Vemuluri , V.R. and Bandal , J. and Shouche , Y. and Rale , V. and Sharma , A. (2017) Corynebacterium godavarianum sp. nov., isolated from the Godavari river, India. Int J Syst Evol Microbiol. .

Jani , K. and Sharma , A. (2021) Targeted amplicon sequencing reveals the probiotic potentials of microbial communities associated with traditional fermented foods of northeast India. LWT- Food Science and Technology, 147. p. 111578.

Jani , K. and Sharma , A. and Rale , V. and Shouche , Y. (2017) Impact of Microbiome Studies on Human Healthcare.  Indian Journal of Public Health Research and Development, 8 (4). 1009 .

Jani , K. and Srivastava, V. and Sharma , P. and Aruna Vir, A. and Sharma , A. (2021) Easy Access to Antibiotics; Spread of Antimicrobial Resistance and Implementation of One Health Approach in India. Journal of Epidemiology and Global Health. pp. 1-9.

Jena, J and Narwade, N and Das, T and Dhotre, D and Sarkar, U and Shouche, Y (2020) Treatment of industrial effluents and assessment of their impact on the structure and function of microbial diversity in a unique Anoxic-Aerobic sequential batch reactor (AnASBR). Journal of Environmental Management, 261. p. 110241.

Jiya , N and Shede, P and Sharma , A (2023) Diversity and composition of fungal communities across diverse environmental niches in Antarctica. Polar Science.

Johnning , A. and Moore , E.R. and Svensson-Stadler , L. and Shouche , Y.S. and Larsson , D.G. and Kristiansson , E. (2013) Acquired Genetic Mechanisms of a Multiresistant Bacterium Isolated from a Treatment Plant Receiving Wastewater from Antibiotic Production. Applied and Environmental Microbiology , 79 (23). p. 7256.

Joshi, A. and Thite , S. and Karodi, P. and Joseph, N. and Lodha, T. (2021) Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera:. Frontiters in Microbiology. 2021 Oct 11;12:722369., 12. p. 722369.

Joshi, A. and Thite , S. and Kulkarni, G. and Dhotre, D. and Joseph, N. and Venkata Ramana, V. and Polkade , A. and Shouche, Y. (2016) Nitrincola alkalisediminis sp. nov., an alkaliphilic bacterium isolated from an alkaline lake. March 2016 66: 1254-1259, doi: 10.1099/ijsem.0.000868 , 66. pp. 1254-1259.

Josi , A and Thite, S and Lodha, T and Joseph , N and Mengade , P (2023) Genomic insights of an alkaliphilic bacterium Halalkalibacter alkaliphilus sp. nov. isolated from an Indian Soda Lake. Antonie van Leeuwenhoek.

Kabirnataj , S and Nematzadeh , GA and Talebi, AF and Saraf , A and Suradkar , A and Tabatabaei, M and Singh, P (2020) Description of novel species of Aliinostoc, Desikacharya and Desmonostocusing a polyphasic approach. International Journal of Systematic and Evolutionary Microbiology , 70 (5). pp. 3413-3426.

Kadam , P and Kajale , S and Sharma , A and Dhotre , D and Barvkar , V and Shouche, Y and Zinjarde, S (2022) Whole-Genome Sequencing of the Tropical Marine Bacterium Nocardiopsis dassonvillei NCIM 5124, Containing the Ectoine Biosynthesis Gene Cluster ectABC. Microbiology Resource Announcements. , 11 (10). e0043522.

Kajale, S. and Deshpande, N. and Lodha, T. and Shouche, Y. and Sharma, A. (2022) Natronococcus pandeyae sp. nov., a Novel Haloarchaeon from Sambhar Salt Lake. Current Microbiology. 2022 Jan ; 79 : 51. . pp. 79-51.

Kajale , S and Jani, K and Sharma , A (2021) Contribution of archaea and bacteria in sustaining climate change by oxidizing ammonia and sulfur in an Arctic Fjord. Genomics, 113 (1-2). pp. 1272-1276.

Karade, S. and Sen, S. and Shergill , SPS. and Jani, K. and Shouche , Y. and Gupta , RM. (2021) Whole genome sequence of colistin-resistant Escherichia coli from western India. Medical Journal of Armed Forces India. , 77 (3). pp. 297-301.

Karmodiya , K. and Saurabh , J. and Pradhan , J.S. and Joshi , B. and Jangid , R. and Reddy , P.C. and Galande , S. (2015) A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation and identifies H3K36me2 as a global mark of gene suppression. Epigenetics Chromatin. , 8 (32).

Kaur M, M and Vyas P, , P and Rahi , P and Sharma , P (2022) Chlorpyrifos- and carbofuran-tolerant phosphate-solubilising Arthrobacter oxydans and Bacillus flexus improved growth and phosphorus content in potato in pesticide-amended soils. Potato Research, 65. pp. 213-231.

Kaushik , R. and Pandit , MK. and Meyerson, LA. and Chaudhari, DS. and Sharma, M. and Dhotre , D. and Shouche , YS. (2021) Contrasting Composition, Diversity and Predictive Metabolic Potential of the Rhizobacterial Microbiomes Associated with Native and Invasive Prosopis Congeners. Current Microbiology, 78 (5). pp. 2051-2060.

Khairnar , M and Hagir, A and Parmar, K and Sayyed, RZ and James, EK and Rahi, P (2022) Phylogenetic diversity and plant growth-promoting activities of rhizobia nodulating fenugreek (Trigonella foenum-graecum Linn.) cultivated in different agroclimatic regions of India. FEMS Microbiology Ecology, 98 (2). fiac014.

Khan , KA and Ganeshprasad , DN and Sachin, HR and Shouche, YS and Hamed , A and Ghramh, HA and Sneharan, AH (2023) Gut microbial diversity in Apis cerana indica and Apis florea colonies: a comparative study. Frontiers in Veterinary Science.

Kirdat, K and Tiwarekar, B and Sathe, S and Yadav , A (2023) Kirdat K, Tiwarekar B, Sathe S, Yadav A.* From sequences to species: Charting the phytoplasma classification and taxonomy in the era of taxogenomics. Frontier in . Microbiology : Evolutionary and Genomic Microbiology. 2023 Mar : 14. Frontier in Microbiology : Evolutionary and Genomic Microbiology. , 14.

Kirdat , K and Sundararaj, R and Mondal, S and Reddy, MK and Thorat, V and Yadav A., A (2019) Novel aster yellows phytoplasma subgroup associated with sandalwood spike disease in Kerala, India. Phytopathogenic Mollicutes, 9 (1). pp. 33-34.

Kirdat , K and Thorat , V and Yadav , A (2019) A new elm yellows phytoplasma strain associated with leaf yellowing disease of Tamarindus indica in India. Phytopathogenic Mollicutes. , 9 (1). pp. 11-12.

Kirdat , K and Tiwarekar, B and Swetha, P and Padma, S and Thorat, V and Manjula, KN and Kavya, N and Sundararaj , R and Yadav, A (2022) Nested Real-Time PCR Assessment of Vertical Transmission of Sandalwood Spike Phytoplasma (' Ca. Phytoplasma asteris') . Biology (Basel), 11 (10). p. 1494.

Kirdat , K and Tiwarekar, B and Thorat, V and Sathe, S and Shouche, Y and Yadav, A (2020) Candidatus Phytoplasma sacchari, a novel taxon - associated withSugarcane Grassy Shoot (SCGS) disease. International Journal of Systematic and Evolutionary Microbiology., 71 (1).

Kirdat , K. and Tiwarekar , BVT. and Sathe , S. and Yadav A, Y. (2020) First report of association of a 16SrII group phytoplasma with a witches’ broom disease of Croton bonplandianum. Phytopathogenic Mollicutes, 10 (1). pp. 100-103.

Kolekar , Y.M. and Pawar , S.P. and Zheng , L. and Adav , S.S. and Li W, and Shouche , Y.S. and Dastager , S.G. and Kodam , K.M. (2013) Alishewanella solinquinati sp. nov., Isolated from Soil Contaminated with Textile Dyes. Current Microbiology, 67 (4). pp. 454-459. ISSN October 2013, Volume 67, Issue 4, pp 454-459

Kovale , L. and Nimonkar, Y. and Green, SJ. and Shouche, YS. and Prakash, O. (2021) Antibiotic susceptibility of human gut-derived facultative anaerobic bacteria is different under aerobic versus anaerobic test conditions. Microbes and Infection. p. 104847.

Kulkarni , G. and Dhotre , D. and Dharne, M. and Misra , V. and Chowdhury , S. and Misra, S. and Patole, M. and Shouche , Y. (2013) Draft genome of Ochrobactrum intermedium strain M86 isolated from non-ulcer dyspeptic individual from India. Gut Pathogene, 5 (7). pp. 1-7.

Kulkarni , G. and Gohil, K. and Misra, V. and Kakrani, A.L. and Misra, S.P. and Patole, M. and Shouche , Y. and Dharne, M. (2016) Multilocus sequence typing of Ochrobactrum spp. isolated from gastricniche. J Infect Public Health. , S1876- (0341(1). pp. 30031-30034.

Kulkarni , G. and Gohil , K. and Misra , V. and Kakrani , A.L. and Misra , S.P. and Patole, M. and Shouche , Y. and Dharne , M. (2017) Multilocus sequence typing of Ochrobactrum spp. isolated from gastric niche. Journal of Infection and Public Health, 10 (2). pp. 201-210.

Kulkarni , G.J. and Shetty, S. and Dharne , M.S. and Shouche , Y.S. (2015) Genome sequencing analysisreveals virulence-related gene content of Ochrobactrum intermedium strain 229E, aurease-positive strain isolated from the human gastric niche. FEMS Microbiology Letters . , 359 (1). pp. 12-15. ISSN 2014 Oct;359(1):12-5.

Kumar, R and Chaudhry, V and Om Prakash, P (2022) Multi-omics profiling of unique niches to reveal the microbial and metabolite composition. Frontiers in Microbiology.

Kumar, S and Suyal, DC and Yadav, A and Shouche, Y and Goel , R (2020) Psychrophilic Pseudomonas helmanticensis proteome under simulated cold stress. Cell Stress Chaperones., 25 (1025). p. 2025.

Kumar , H. and Pandey , P.K. and Doiphode , V.V. and Vir S.; , S. and Bhutani , K.K. and Patole , M.S. and Shouche , Y.S. (2013) Microbial Community Structure at Different Fermentation Stages of Kutajarista, a Herbal Formulation. Indian J Microbiol , 53 (1). pp. 11-17.

Kumar , MR. and Jani , K. and Parvathi , JR. and Thomas, BM. and Raja , SSS. and Pandey , A. and Sharma, A. (2022) Bacterial diversity of geochemically distinct hot springs located in Maharashtra, India. Archives of Microbiology, 204. p. 110.

Kumar , S and Paul , D and Bhushan , B and Wakchaure , GC and Meena , KK and Shouche , Y (2020) Traversing the “Omic” landscape of microbial halotolerance for key molecular processes and new insights. Critical Review in Immunology , 46 (6).

Kumar , S and Paul , D and Shouche, Y and Suryavanshi , M (2020) Data on genome sequencing, assembly, annotation and genomic analysis of Rhodococcus rhodochrous strain SPC17 isolated from Lonar Lake. Data in Brief, 29. p. 105336.

Kumari , R. and Chouhan , S. and Singh , S. and Chhipa , R.R and Ajay , A.K. and Bhat , M.K (2017) Constitutively activated ERK sensitizes cancer cells to doxorubicin: Involvement of p53-EGFR-ERK pathway. Journal of Bioscience, 42 (1). pp. 31-41. ISSN 42(1):31-41.

Kumbhare , S.V. and Dhotre , D.P. and Dhar , S.K. and Jani, K. and Apte , D.A. and Shouche, Y.S. and Sharma, A. (2015) Insights into diversity and imputed metabolic potential of bacterial communities in the continental. PLoS One (DOI:10). pp. 1-15. ISSN PLOS ONE | DOI:10.1371/journal.pone.0129864 June 11, 2015 1 / 14

Kumbhare , S.V. and Kumar , H. and Chowdhury , S.P. and Dhotre , D.P. and Endo , A. and Mättö , J. and Ouwehand , A.C. and Rautava , S. and Joshi , R. and Patil NP, N.P. and Patil , R.H. and Isolauri , E. and Bavdekar , A.R. and Salminen , S. and Shouche , Y.S. (2017) A cross-sectional comparative study of gut bacterial community ofIndian and Finnish children. Sci Rep. , 7 (1). p. 10555.

Kumkar , SN and Kamble, EE and Chavan, NS and Dhotre, DP and Pardesi , KR (2022) Diversity of resistant determinants, virulence factors, and mobile genetic elements in Acinetobacter baumannii from India: A comprehensive in silico genome analysis. Frontiers in Cellular and Infection Microbiology.

Kurli , R. and Chaudhari, D. and Pansare , A.N. and Khairnar, M. and Shouche, Y.S. and Rahi , P. (2018) Cultivable Microbial Diversity Associated With Cellular Phones. Front Microbiol. , 7 (9). p. 1229.

Lavecchia, , A. and Curci, M. and Jangid, K. and Whitman, W.B. and Ricciuti, P. and Pascazio, S. and Crecchio, C. (2015) Microbial 16S gene-based composition of a sorghum cropped rhizosphere soil under different fertilization managements. Biology and Fertility of Soils, 51 (6). pp. 661-672.

Lodha , T and Narvekar, S and Karodi , P (2021) Classification of uncultivated anammox bacteria and Candidatus Uabimicrobium into a new classes and provisional nomenclature as Candidatus Brocadiia classis nov. and Candidatus Uabimicrobiia classis nov. of the phylum Planctomycetes and novel family Candidatus Scalinduaceae fam. nov to accommodate the genus Candidatus Scalindua. Systematic and Applied Microbiology, 44 (6). p. 126272.

Madhupriya, G.S. and Thorat, V. and Yadav , A. and Rao , G.P. (2017) Identification and Characterization of 16SrIX and 16SrXI groups of phytoplasmas associated with leaf yellows and declining disease of garlic and onion in India. Indian Phytopathology , 70 (3). pp. 368-372.

Mahajan , SG and Nandre , VS and Salunkhe, RC and Shouche, YS and Kulkarni, MV (2020) Chemotaxis and physiological adaptation of an indigenous abiotic stress tolerant plant growth promoting Pseudomonas stutzeri: Amelioration of salt stress to Cicer arietinum. Biocatalysis and Agricultural Biotechnology. Volume 27, August 2020, 101652, 27. p. 101652.

Mahale, K.N. and Patole, M.S. (2015) The crux and crust of ebolavirus: Analysis of genome sequences and glycoprotein gene. Biochemical and Biophysical Research Communications, 463 (4). pp. 756-761.

Mahale , K.N. and Paranjape, P.S. and Marathe , N.P. and Dhotre, D.P. and Chowdhury, S. and Shetty, S.A. and Sharma, K. and Tuteja, U. and Sharma , A. and Batra , H.V. and Shouche , Y.S. (2014) Draft Genome Sequences of Yersiniapestis Strains from the 1994 Plague Epidemic of Surat and 2002 Shimla Outbreak in India. Indian Journal of Microbiology, 54 (4). pp. 480-482.

Mane , PC and Patil , VS and Chaudhari , RD and Karodi PP, , PP and Mane , PC and Mehrotra , P and Pawar , SP and Shouche , YS and Vemuluri , VR (2021) Description and genomic insights into a multidrugresistant novel bacterium Savagea serpentis sp. nov., isolated from the scats ofa vine snake (Ahaetulla nasuta). Antonie Van Leeuwenhoek..

Mane , S and Dixit, KK and Lathwal , N and Dhotre, D and Kadus, P and Shouche, YS and Bhalerao , S (2021) Rectal administration of buttermilk processed with medicinal plants alters gut microbiome in obese individuals. Journal of Diabetes & Metabolic Disorders, 20 (2). pp. 1415-1427.

Marano , RBM and Fernandes , T and Prakash , O and Nimonkar , Y and Brown , C and Cytryn, E (2020) A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants . Environmental International, 144 (106035).

Marathe, N.P. and Gaikwad, S.S. and Vaishampayan , A.A. and Rasane, M.H. and Shouche, Y.S. and Gade, W.N. (2016) Mossambicus tilapia (Oreochromis mossambicus) collected from water bodies impacted by urban waste carries extended-spectrum beta-lactamases and integron-bearing gut bacteria. Journal of Bioscience, 41 (3). pp. 341-346.

Marathe , N and Shetty , S and Lanjekar , V and Ranade , D and Shouche , Y.S. (2012) Changes in human gut flora with age: an Indian familial study. BMC Microbiology , 12. pp. 222-232.

Marathe , N.P. and Regina , V.P. and Walujkar , S.A. and Charan , S.S. and Moore , E.R. and Larsson , D.G. and Shouche , Y.S. (2013) A Treatment Plant Receiving Waste Water from Multiple Bulk Drug Manufacturers Is a Reservoir for Highly Multi-Drug Resistant Integron-Bearing Bacteria (Open Access Journal). PLoS One, 8 (10). e77310-e77310.

Marathe , N.P. and Rasane, M.H. and Kumar, H. and Patwardhan , A.A. and Shouche , Y.S. and Diwanay , S.S. (2013) In vitro antibacterial activity of Tabernaemontana alternifolia (Roxb) stem bark aqueous extracts against clinical isolates of methicillin resistant Staphylococcus aureus. Annals of Clinical Microbiology and Antimicrobials , 26 (12). pp. 1-12.

Marathe , N.P. and Shetty , S.A. and Lanjekar , V.B. and Rasane , M.H. and Ranade , D.R. and Shouche , Y.S. (2014) Genome sequencing of multidrug resistant novel Clostridium sp. BL8 reveals its potential for pathogenicity. Gut Pathogens , 6 (30). pp. 1-5.

Marathe , N.P. and Shetty , S.A. and Shouche, Y.S. and Larsson, D.G. (2016) Limited Bacterial Diversity within a Treatment Plant Receiving Antibiotic-Containing Waste from Bulk Drug Production. PLoS One. , 11 (11). e0165914-e0165914.

Mawar , R. and Ram , L. and Sharma, D. and Jangid K., K. (2021) Bacterial antagonists against Ganoderma lucidum the incitant of root rot of Indian Mesquite. Indian Phytopathology, 74. pp. 843-848.

Mishra , D and Suradkar, A and Saraf , A and Singh , P (2019) Phylogenetic evaluation of the true branched heterocytous cyanobacteria and description of soil dwelling Westiellopsis akinetica sp. nov. FEMS Microbiology Letters, 67 (5). p. 46. ISSN 67, Issue 5,

Mishra , S and Mitra , S and Radhika , NS and Yadav , A and Rao , GP (2019) Multilocus gene-specific characterization of ‘Candidatus Phytoplasma australasia’associated with shoot proliferation disease of small cardamom in India. 3 Biotech. Oct. , 9 (11). p. 420.

Mitra, S and Debnath, P and Bahadur, A and Chandra Das, S and Yadav, A and Rao GP. , GP (2019) First Report on ‘Candidatus Phytoplasma asteris’(16SrI-B subgroup) Strain Associated with Pineapple Shoot Proliferation and Witches’ Broom Symptoms in Tripura, India. Plant Diseases. Sept 2019;103(11):2941., 103 (11). p. 2941.

Mitra , S and Debnath, P and Bahadur, A and Das , SC and Kirdat, K and Yadav, A and Rao , G (2019) First Report of an Association of ‘Candidatus Phytoplasma australasia’ with Cashew nut Inflorescence Decline (CaID) Disease in Tripura, a North-Eastern State of India. Plant Diseases. , 101 (3). 970-970.

Mohanty , S and Jyotsana , N and Sharma , A and Kloos , A and Gabdoulline, R and Othman, N and Lai , CK and Schottmann , R and Mandhania , M (2020) Targeted Inhibition of the NUP98-NSD1 Fusion Oncogene in Acute Myeloid Leukemia. Cancers . 2020 Sep 26;12(10):2766, 12 (10). p. 2766.

Mohapatra, S and Menon, NG and Mohapatra , G and Pisharody, L and Pattnaik, A and Menon, NG and Bhukya, PL and Srivastava , M and Singh, M and Barman, MK and Gin , KY and Mukherji , S (2021) The novel SARS-CoV-2 pandemic: Possible environmental transmission, detection, persistence and fate during wastewater and water treatment. Science of the Total Environment, 765. p. 142746.

Mongad, DS. and Chavan, NS. and Narwade , NP. and Dixit, K. and Shouche, YS. and Dhotre, DP. (2021) MicFunPred: A conserved approach to predict functional profiles from 16S rRNA gene sequence data. Genomics, 113 (6). pp. 3635-3643.

Mudgil , D and Paul, D and Baskar, S and Baskar, R and Shouche, YS (2022) Cultivable microbial diversity in speleothems using MALDI-TOF spectrometry and DNA sequencing from Krem Soitan, Krem Lawbah, Krem Mawpun, Khasi Hills, Meghalaya, India. Archives of Microbiology, 204 (8). p. 495.

Mugade , M. and Patole , M. and Pokharkar , V. (2017) Bioengineered mannan sulphate capped silver nanoparticles for accelerated and targeted wound healing: Physicochemical and biological investigations. Biomedicine & Pharmacotherapy, 91. pp. 95-110. ISSN Volume 91, July 2017, Pages 95-110

Nair, N.V. and Joseph, N. and Krishna, K. and Sneha, K.G. and Tom, N. and Jangid, K. and Nair S. , A. (2015) A comparative study of coastal and clinical isolates of Pseudomonas aeruginosa. Braz. Braz J Microbiol. , 46 (3). pp. 725-734.

Nair , AV and Praveen , NK and Joseph , N and Leo , AM and Vijayan , KK (2021) Isolation and characterization of a novel antimicrobial oxatetracyclo ketone from Bacillus stercoris MBTDCMFRI Ba37 isolated from the tropical estuarine habitats of Cochin. Molecular Biology Reports. , 48 (2). pp. 1299-1310.

Nandre VS, V.S. and Bachate SP, S.P. and Salunkhe RC, R.C. and Bagade AV, A.V. and Shouche YS, Y.S. and Kodam KM. , K.M. (2017) Enhanced Detoxification of Arsenic Under Carbon Starvation: A New Insight into Microbial Arsenic Physiology. Current Microbiology, 74 (5). pp. 614-622.

Nanjani, S. and Paul , D. and Keharia , H. (2021) Genome analysis to decipher syntrophy in thebacterial consortium 'SCP' for azo dye degradation. BMC Microbiology, 21. p. 177.

Narayana, S. and Mohanraju,, R. and Singh, , P. and Thamke,, V. and Tapase,, S. and Shouche, Y.S. and Kodam, K. (2017) New record of a bloom forming, genotoxic strain Nodularia strain (KT447209) from Andaman and Nicobar Islands, India. Chemosphere, 174. pp. 315-320.

Nazir, R and Ganai , BA and Rahi, P and Rehman , S and Farooq, S and Dar, R (2020) MALDI-TOF-MS and 16S rRna characterization of lead tolerant metallophile bacteria isolated from saffron soils of Kashmir for their sequestration potential. Saudi Journal of Biological Sciences, 27 (8). pp. 2047-2053.

Nimonkar , YS and Godambe, T and Kulkarni, A and Patel, T and Paul , D and Paul , D and Rale , V and Om Prakash., P (2022) Oligotrophy vs. copiotrophy in an alkaline and saline habitat of Lonar Lake . Frontiers in Microbiology. 2022 Aug 4;13:939984. .

Nimonkar , YS and Kajale , S and Dake , M and Prakash, O (2023) Draft Genome Sequence of Ignatzschineria sp. Strain RMDPL8A, a Bacterium Isolated from Landfill Leachate. Microbiology Resource Announcements. 2023 Jun 5:e0030723. . e0030723.

Om Prakash, P (2022) Lack of kinship with anaerobes is a kind of short-sightedness of agricultural and environmental microbiologists. Environmental. Microbiology Report, 14 (2). pp. 330-332.

Pandey , N and Jain, R and Dhakar, K and Sharma, A and Pandey , A (2023) A reduction in temperature induces bioactive red pigment production in a psychrotolerant Penicillium sp. GEU_37 isolated from Himalayan soil. Fungal Biology.

Pandey P.K, P.K and Verma P, P and Kumar H, H and Bavdekar A, A and Patole , M.S. and Shouche , Y.S. (2012) Comparative analysis of fecal microflora of healthy full-term Indian infants born with different methods of delivery (vaginal vs cesarean): Acinetobacter sp. prevalence in vaginally born i. Journal of Bioscience, 37 (6). pp. 989-998.

Paramasiva, I. and Shouche, Y.S. and Kulkarni, G.J. and Krishnayya, P.V. and Akbar , S.M. and Sharma , H.S. (2014) Diversity in gut microflora of Helicoverpa armigera populations from different regions in relation to biological activity of Bacillus thuringiensis δ-endotoxin Cry1Ac. ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY, 87 (4). pp. 201-2013. ISSN 87(4):201-13

Parhamfar , M and Abtahi , H and Godini , K and Saeedi , R and Sartaj , M and Villasenor , J and Coulon , F and Kumar , V and Soltanighias , T and Ghaznavi-Rad , E and Koolivand, A (2020) Biodegradation of heavy oily sludge by a two-step inoculation composting process using synergistic effect of indigenous isolated bacteria. Process Biochemistry, 91. pp. 223-230.

Parhi, P and Mulik, A and Jadhav , V and Yadav, A and Shouche Y, Y and Bhadekar, R (2019) Production and characterization of biosurfactant from Halomonas sp. BRI3. Indian J Biochem Biophys. , 56 (5). pp. 384-391.

Patel, V. and Munot , H. and Shouche, YS and Madamwar, D. (2014) Response of bacterial community structure to seasonal fluctuation and anthropogenic pollution on coastal water of Alang-Sosiya ship breaking yard, Bhavnagar, India. Bioresour Technol . 2014 Jun;161:362-70., 161. pp. 362-370.

Patil , DP and Dhotre , DP and Chavan , SG and Sultan , A and Jain , DS and Lanjekar , VB and Schouche, Y.S. and Patole , M.S. (2012) Molecular analysis of gut microbiota in obesity among Indian individuals. Journal of Bioscience, 37 (4). pp. 647-657.

Patil , V.S. and Salunkhe, R.C. and Patil, R.H. and Husseneder, C. and Shouche , Y.S. and Venkata Ramana , V. (2015) Enterobacillus tribolii gen. nov., sp. nov., a novel member of the family Enterobacteriaceae, isolated from the gut of a red flour beetle,. Antonie Van Leeuwenhoek., 107 (5). 1207-1216..

Paul, D. and Kumbhare , S.Y. and Mhatre S.S. , S.S and Chowdhary S.P., S.P. and Shetta , S.A. and Marathe N.P., N.P and Bhute , S. and Shouche , Y.S. (2016) Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock. Frontier in Microbiology .

Pawar , K.D and Banskar , S. and Rane , S.D and Charan , S.S and Kulkarni , G.J and Sawant , S.S and Patole , M.S. and Shouche , Y.S. (2012) Bacterial diversity in different regions of gastrointestinal tract of Giant African Snail (Achatina fulica). Microbiology Open. pp. 415-426.

Pawar , H. and Chavan, S. and Mahale, K. and Khobragade , S. and Kulkarni, A. and Patil, A. and Chaphekar, D. (2015) A proteomic map of the unsequenced kala-azar vector Phlebotomus papatasi using cell line. Acta Tropica, 152. pp. 80-89. ISSN Volume 152, December 2015, Pages 80–89

Pawar , H. and Kulkarni, A. and Dixit , T. and Chaphekar , D. and Patole, M.S. (2014) A bioinformatics approach to reanalyze the genome annotation of kinetoplastid protozoan parasite Leishmania donovani. Genomics, 104 (6). pp. 554-561. ISSN Volume 104, Issue 6, Part B, December 2014, Pages 554–561

Pawar , H. and Pai, K. and Patole , M.S. (2016) A novel protein coding potential of long intergenicnon-coding RNAs (lincRNAs) in the kinetoplastid protozoan parasite Leishmaniamajor. Acta Trop. , 167. pp. 21-25.

Pawar , H. and Renuse, S. and Khobragada, S.N. and Chavan, S. and Sathe, G. and Kumar , P. and Mahale , K.N. and Gore, K. and Kulkarni , A. and Dixit , T. (2014) Neglected tropical diseases and omics science: proteogenomics analysis of the promastigote stage of Leishmania major. OMICS: A Journal of Integrative Biology, 18 (8). pp. 499-512. ISSN 18(8):499-512

Pereira, JAM and Porto-Figueira, P and Taware, R and Sukul , P and Rapole, S and Camara , JS (2020) Unravelling the Potential of Salivary Volatile Metabolites in Oral Diseases. Molecules, 25 (13). p. 3098.

Petersen , E and Hui, DS and Nachega, JB and Ntoumi, F and Goletti , D and Aklillu , E and Sharma, A and Varghese, GM and Zumla, A (2023) End of the Bedaquiline patent – a crucial development for moving forward affordable drugs, diagnostics, and vaccines for infectious diseases in low- and middle-income countries. International Journal of Infectious Diseases, S1201- (23). 00517-00519.

Polkade, A.V. and Mantri , S.S. and Patwekar , U.J. and Jangid K. , K. (2016) Quorum Sensing: An Under-Explored Phenomenon in the Phylum Actinobacteria. Frontiers in Microbilogy : Extreme Microbiology .

Polkade, A.V. and Ramana, V.V. and Joshi , A. and Pardesi, L. and Shouche, Y.S. (2015) Rufibacter immobilis sp. nov., isolated from a high-altitude saline. Int J Syst Evol Microbiol, 65 (5). pp. 1592-1597.

Pote , S.T. and Chakraborty , A. and Lahiri , K.K. and Patole, M.S. and Deshmukh , R.A. and Shah, S.R. (2017) Keratitis by a rare pathogen Colletotrichum gloeosporioides: A case report. Journal of Medical Mycology.

Pote , ST and Sonawane , MS and Rahi, P and Shah, SR and Shouche, YS and Patole, MS and Thakar , MR and Sharma, R (2020) Distribution of Pathogenic Yeasts in Different Clinical Samples: Their Identification, Antifungal Susceptibility Pattern, and Cell Invasion Assays. Infection and Drug Resistance, 2020 (13). pp. 1133-1145.

Prakash, O and Dodsworth, JA and Dong, X and Ferry , JF and L'Haridon, S and Imachi , H and Kamagata, Y and Rhee, SK and Sagar , I and Shcherbakova, V and Wagner, D and Whitman, WB Proposed minimalstandards for description of methanogenic archaea. Journal of Systematic and Evolutionary Microbiology , 73 (4).

Prakash, O and Nimonkar, Y and Desai, D (2020) A Recent Overview of Microbes and Microbiome Preservation. Indian Journal of Microbiology. , 60 (3). pp. 297-309.

Prakash, O and Parmar, M and Vaijanapurkar, M and Rale, V and Shouche, YS (2021) Recent trend, biases and limitations of cultivation-based diversity studies of microbes. FEMS Microbiology Letters, 368 (17).

Prakash, O. and Nimonkar , Y. and Munot, H. and Sharma, A. and Vemuluri , V.R. and Chavadar, M.S. and Shouche, Y.S. (2014) Description of Micrococcus aloeverae sp. nov., an endophytic actinobacterium isolated from Aloe vera. Int. J. Syst. Evol. Microbiol. , 64 (10). p. 3427.

Prakash , O and Nimonkar , Y and Desai , D (2020) Recent Overview of Microbes and MicrobiomePreservation. ndian Journal of Microbiology. 2020 Sep;60(3):297-309. , 60 (3). pp. 297-309.

Prakash , O and Nimonkar , Y and Shouche , Y.S. (2013) Practice and prospects of microbial preservation. FEMS Microbiol Lett , 339. pp. 1-9.

Prakash , O and Sharma, A and Shouche , YS (2020) Importance of vision, visibility and viability of Microbial Resource Centres. Current Science, 119 (4). pp. 625-631.

Prakash , O. and Muduli , S. and Kumar , R. and Nimonkar Y5, Shouche, Y. and Shouche, Y.S. (2017) Description of Auricoccucs indicus gen. nov., sp. nov., isolated from skin of human ear. International Journal of Systematic and Evolutionary Microbiology.

Prakash , O. and Munot , H. and Nimonkar, Y. and Sharma, M. and Kumbhare, S. and Shouche , Y.S. (2014) Description of Pelistega indica sp. nov., isolated from human gut. International Journal of Systematic and Evolutionary Microbiology, 64. pp. 1389-1394.

Prakash , O. and Nimonkar , Y. and Chavadar , M.S. and Bharti , N. and Pawar , S. and Sharma , A. and Shouche , Y.S. (2017) Optimization of Nutrients and Culture Conditions for Alkaline Protease Production Using Two Endophytic Micrococci: Micrococcus aloeverae and Micrococcus yunnanensis. Indian J Microbiol. , 57 (2). pp. 218-225.

Prakash , O. and Prakash , P.K. and Kulkarni, G.L. and Mahale , K.N. and Shouche , Y.S. (2014) Technicalities and Glitches of Terminal Restriction Fragment Length Polymorphism (T-RFLP). Indian Journal of Microbiology, 54 (3). pp. 255-261.

Prakash , O. and Sharma, A. and Shouche , YS (2020) Importance of Vision, Visibility and Vitality of Microbial Resource Centres. Current Science, 119 (4). pp. 625-631.

Prakash , O. and Shouche , Y.S. and Jangid , K and Kostka , J.E (2013) Microbial cultivation and the role of microbial resource centers in the omics era. Appl Microbiol Biotechnol , 97 (1). pp. 51-62.

Prakesh , O and Green , SJ and Singh , P and Jasrotia , P and Kostka , JE (2020) Stress-related ecophysiology of members of the genus Rhodanobacter isolated from a mixed waste contaminated subsurface. Frontiers of Environmental Science & Engineering, 15 (23). p. 2021.

Puri , A and Bajaj , A (2020) Complete genome sequence of Paracoccus sp. strain AK26: Insights into multipartite genome architecture andmethylotropy. Genomics. p. 2020.

Raghuwanshi , S. and Riedel, S. and Hein, C. and Agarwal, T. and Zaidi, M.G.H. and Yadav, A. and Shouche, Y.S. and Goel , R. (2016) Selection of Poly(R)-3-hydroxybutyric acid utilizing bacteria by enrichment, optimization and compatibility testing for consortia development. Chemistry and Ecology , 32 (6). 583-597 .

Rahi, P. (2021) Regulating access can restrict participation in reporting new species and taxa. Nature Microbiology, 6 (12). pp. 1469-1470.

Rahi, P. and Vyas, P. Microorganisms associated with tea rhizosphere in the Indian Himalayan Region. ENVIS Centre on Himalayan Ecology. ENVIS Bulletin Himalayan Ecology, 23. pp. 48-54.

Rahi , P and Giram , P and Chaudhari , D and DiCenzo , GC and Kiran , S and Khullar , A and Chandel , M and Gawari , S and Mohan , A and Chavan , S and Mahajan , B (2020) Rhizobium indicum sp. nov., isolated from root nodules of pea (Pisum sativum) cultivated in the Indian trans-Himalayas. Systematic and Applied Microbiology. Volume 43, Issue 5, September 2020, 126127, 43 (5). p. 126127.

Rahi , P. and Prakash , O. and Shouche , Y.S. (2016) Matrix-Assisted Laser Desorption/ Ionization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists. Front Microbiol., 7. p. 1359.

Rahi , P. and Kurli , R. and Khairnar , M. and Jagtap , S. and Pansare , A.N. and Dastager , S.G. and Shouche , Y.S. (2017) Description of Lysinibacillus telephonicus sp. nov., isolated from the screen of a cellular phone. Int J Syst Evol Microbiol. (67). pp. 2289-2295. ISSN 67: 2289-2295

Rahi , P. and Khairnar, M. and Hagir, A. and Narayan, A. and Jain , KR. and Madamwar , D. and Pansare, A. and Shouche, Y. (2021) Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae. Archives of Microbiology., 203. 3591-3604 .

Rahman , A.A. and Krishnasastry, M.V. (2014) Hemolytic activity of mycobacterial TlyA (Rv1694) is independent of its rRNA methylation activity. CURRENT SCIENCE, 106 (5). pp. 775-729.

Rambia, A and Veluchamy, C and Rawat, JM and Jamdhade, MD and Purohit, S and Pawar , KD and Rajasekaran, C and Rawat, B and Sharma, A (2023) Revealing bacterial and fungal communities of the untapped forest and alpine grassland zones of the Western-Himalayan region. International Microbiology.

Ranade , A and Gayakwad , S and Chougule , S and Shirolkar , A and Gaidhani , S and Pawar, SD (2020) Gut microbiota: metabolic programmers as a lead for deciphering Ayurvedic pharmacokinetics. Current Science., 119 (3). pp. 451-461. ISSN Aug. 2020 : 119 : 3. 451-461.

Ranebennur, H and Kirdat , K and Tiwarekar, B and Rawat, K and Chalam, VC and Solanke, AU and Yadav, R and Singh, K and Sathe, S and Yadav, A and Rao, GP (2022) Draft genome sequence of 'Candidatus Phytoplasma australasia', strain SS02 associated with sesame phyllody disease. 3 Biotech, 12 (5). p. 107.

Ranjan, M. and Karade , S. and Rahi , P. and Singh , S.P and Sen , S. (2017) Urosepsis due to Multi Drug Resistant Myroidesodoratimimus: A Case Report. International Journal of Current Microbiology and Applied Sciences , 6 (8). pp. 1930-1935.

Ranjan , A.K and Joglekar , M.V. and Atre , A.N. and Patole , M. and Bhonde , R.R. and Hardikar , A.A. (2012) Cellular detection of multiple antigens at single cell resolution using antibodies generated from the same species. Journal of Immunological Methods, 379 . pp. 42-47.

Ranjan , A.K and Joglekar , M.V and Atre , A.N and Patole , M.S. and Bhonde , R.R. and Hardikar , A.A. (2012) Simultaneous imaging of microRNA or mRNA territories with protein territory in mammalian cells at single cell resolution. RNA Biology, 9 (7). pp. 949-953.

Rao , G and Mitra , S and Gopala, A and Rao, A and Yadav, A (2021) Rao G, Mitra S, Gopala, Rao A, Yadav A. Vachellia nilotica: A new host of ‘Candidatus phytoplasma asteris’ and ‘Ca. P. trifolii’-related strains in India. Phytopathogenic Mollicutes. Indian Journals; 2021 June;11(1):64–68. Phytopathogenic Mollicutes, 11 (1). pp. 64-68.

Rao , G. and Madhupriya , V.T. and Manimekalai, R. and Tiwari, A. and Yadav , A. (2017) A century progress of research on phytoplasma diseases in India. Phytopathogenic Mollicutes, 1 (1). p. 38.

Rao , G.P. and Prakasha, T.L. and Priya, M. and Thorat , V. and Kumar, M. and Baranwal , V.K. (2017) First report of 16SrII-D phytoplasmas associated with fodder crops in India. Phytopathogenic Mollicutes Vol. 7 (2), December 2017, 106-110, 7 (2). pp. 106-110.

Reddy , V.S. and Thirumala , M. and Farooq M2, Sasikala C3, , M. and Farooq M2, Sasikala C3, , C. and Venkata Ramana C4., C. (2016) Marinococcus salis sp., nov., a moderately halophilic bacterium isolated from a salt marsh. Arch Microbiol. 2016 Dec;198(10):1013-1018., 198 (10). pp. 1013-1018.

Regar, RK and Gaur, VK and Bajaj , A and Tambat, S and Manickam, N (2019) Comparative microbiome analysis of two different long-term pesticide contaminated soils revealed the anthropogenic influence on functional potential of microbial communities. Science of The Total Environment 2019 Sep:681:413-423., 681. pp. 413-423.

Rutgersson , C and Fick , J. and Marathe , N. and Kristiansson , E. and Janzon, A. and Angelin , M. and Johansson, A. and Shouche, Y. and Flach , C.F. and Larsson, D.G. (2014) Fluoroquinolones and qnr genes in sediment, water, soil, and human fecal flora in an environment polluted by manufacturing discharges. Environment Science Technology , 48 (14). pp. 7825-7832. ISSN 48(14):7825-32.

Sacheti , P. and Patil , R. and Dube, A. and Bhonsle , H. and Thombre, D. and Marathe, S. and Vidhate, R. and Wagh, P. and Kulkarni , M. and Rapole, R. and Gade, W. (2014) Proteomics of arsenic stress in the gram-positive organism Exiguobacterium sp. Applied Microbiology and Biotechnology, 98 (15). pp. 6761-6773.

Sagar, I and Nimonkar, Y and Dhotre, D and Shouche, YS and Ranade, D and Dewala, S and Om Prakash, P (2022) A Microcosm Model for the Study of Microbial Community Shift and Carbon Emission from Landfills. Indian Journal of Microbiology, 62. pp. 195-203.

Salunkhe, R.C. and Narkhede, K.P. and Shouche , Y.S. (2014) Distribution and evolutionary impact of wolbachia on butterfly hosts. Indian J Microbiol. , 54 (3). pp. 249-254.

Sanuth, H.A. and Yadav, A. and Fagade, O.E. and Shouche, Y.S. (2013) Utilization by Proteus sp. and Bordetella sp. Isolated From Solid Waste Dumpsites in Lagos State, Nigeria, First Report. Indian J Microbiol. , 53 (2). pp. 221-226.

Sapre, N and Chakraborty, R and Purohit, P and Bhat, S and Das, G and Bajpe, SR (2020) Enteric pH responsive cargo release from PDA and PEG coated mesoporous silica nanoparticles: a comparative study in Drosophila melanogaster. RSC Advances 10(20):11716-11726 ·, 10 (20). pp. 11716-11726.

Saraf , A and Dawda, HG and Suradkar , A and Agre, V and Singh, P (2020) Fortiea necridiiformans sp. nov., a soil-dwelling cyanobacterium from PachmarhiBiosphere Reserve, India. International Journal of Systematic and Evolutionary Microbiology.

Saraf , A and Dawda, HG and Suradkar , A and Agre , V and Singh , P (2020) Fortiea necridiiformans sp. nov., a soil-dwelling cyanobacterium from PachmarhiBiosphere Reserve, India. International Journal of Systematic and Evolutionary Microbiology. , 70 (08).

Sasi , M and Kumar, S and Hasan, M and Arpitha , SR and Enriqueta Garcia-Gutierrez,, E and Kumari , S and Om Prakash, P and Nain, L and Sachdev, A and Dahuja, A (2022) Current trends in the development of soy-based foods containing probiotics and paving the path for soy-synbiotics. Critical Reviews in Food Science and Nutrition, 25. pp. 1-19.

Sengupta , K and Pal , S (2021) A review on microbial diversity and genetic markers involved in methanogenic degradation of hydrocarbons: futuristic prospects of biofuel recovery from contaminated regions. Environmental Science and Pollution Research, 28. pp. 40288-40307.

Sha , S.P. and Jani , K. and Sharma , A. and Sharma , A. and Anupma , A. and Pradhan , P. and Shouche , Y. (2017) Analysis of bacterial and fungal communities in Marcha and Thiat, traditionally preparedamylolytic starters of India. Sci Rep. , 7 (1). p. 10967.

Shafi , S and Azhar, E and Al-Abri, S and Sharma , A and Merali , N and Al-Tawfiq JA, JA and El-Kafrawy SA, SA and Zumla, A and Shan Lee, S (2022) Infectious diseases threats at the Arba'een - a neglected but one of the largest annually recurring mass gathering religious events. International Journal of Infectious Diseases. 2022 Sep 12;S1201-9712(22)00509-4., 123. pp. 210-211. ISSN 2022 Oct;123:210-211.

Shah , S and Chand , K and Rekadwad , B and Shouche , YS and Sharma , J and Pant , B (2021) A prospectus of plant growth promoting endophytic bacterium from orchid (Vanda cristata). BMC Biotechnolgy, 21 (1). p. 16.

Shah , S and Pant, P and Sharma, R and Shouche , YS and Sharma, J (2019) Coniochaeta dendrobiicola sp. nov. -Fungal Planet 917. Persoonia-Fungal Planet Description (42). pp. 350-351.

Shaligram, S and Narwade, NP and Kumbhare, SV and Bordoloi , M and Tamuli, KJ and Nath, S and Parimelazhagan , T. and Patil, VS and Kapley, A. and Pawar , SP and Dhotre, DP and Muddeshwa, MG and Purohit , HJ and Shouche, YS (2021) Integrated Genomic and Functional Characterization of the Anti-diabetic Potential of Arthrobacter sp. SW1. Current Microbiology, 78. pp. 2577-2588.

Shaligram, S. and Kumbhare, S.V. and Dhotre, D.P. and Muddeshwar , M.G. and Kapley, A. and Joseph, N. and Purohit , H.P. and Shouche, Y.S. and Pawar, S.P. (2016) Genomic and functional features of the biosurfactant producing Bacillus sp. AM13. Funct Integr Genomics, 16 (5). pp. 557-566. ISSN 2016 Sep;16(5):557-66

Shaligram, S. and Narwade , NP. and Kumbhare, SV. and Bordoloi, M. and Tamuli , KJ. and Nath , S. and Parimelazhagan , T. and Patil , VS. and Kapley, A. and Pawar, SP. (2021) Integrated Genomic and Functional Characterization of the Anti-diabetic Potential of Arthrobacter sp. SW1. Current Microbiology, 78 (7). pp. 2577-2588. ISSN 2021 Jul;78(7):2577-2588.

Shanmugam, S.G. and Magbanua, Z.V. and Williams, M.A. and Jangid, K. and Whitman , W.B. and Peterson, D.G. and Kingery , W.L. (2016) Bacterial diversity patterns differed in two developing ecosystems. Microbial Ecology . pp. 1-14.

Shanmugam , S.G. and Magbanua , Z.V. and Williams, M.A. and Jangid, K. and Whitman, W.B. and Peterson , D.G. and Kingery, W.L. (2017) Bacterial diversity patterns differ in soils developing in sub-tropical and cool-temperate ecosystems. Microb Ecol. , 73 (3). pp. 556-569.

Sharma, A and Karande, M and Zumla A, A Advancing sewage surveillance at mass gathering events for reducing transmission of antimicrobial resistant bacterial pathogens. Travel Medicine and Infectious Disease, 54. p. 102619.

Sharma, A. and McCloskey, B and David S. Hui, DS and Rambia A, A and Zumla, A and Traore , T and Shafi, A and El-Kafrawy, E and Azhar, EI and Zumla, A and Rodrigues-Morales AJ., AJ (2022) Global mass gathering events and deaths due to crowd surge, stampedes, crush and physical injuries – Lessons from the Seoul Halloween and other disasters. Travel Medicine and Infectious Disease (102524).

Sharma, A. and Rodriguez-Morales , AJ. and Traore, T. and Shafi , S. and El-Kafrawi, AS and Esam I Azhar , IE and Zumla, A (2022) Globalisation of antibiotic-resistant bacteria at recurring mass gathering events. Lancet, S0140 (6736(2). 01995-01995-X..

Sharma, R. and Prakash, O. and Sonawane, M.S. and Nimonkar, Y. and Golellu, P.B. and Sharma, R. (2016) Diversity and Distribution of Phenol Oxidase Producing Fungi from Soda Lake and Description of Curvularia lonarensis sp. nov. Front. Microbiol..

Sharma, R. and Thakur, A. and Pawar P, P. and Nair K., K. (2017) Fungal Planet description sheets: 625-715. Persoonia-Molecular Phylogeny and Evolution of Fungi , 39. pp. 270-467.

Sharma , A. and Paul , D. and Dhotre , D. and Jani , K. and Pandey , A. and Shouche , Y.S. (2017) Deep sequencing analysis of bacterial community structure of Soldhar hot spring, India. Microbiology, 86 (1). pp. 136-142.

Sharma , A. and Dhar, S.K. and Prakash, O. and Vemuluri, V.R. and Thite , V. and Shouche , Y.S. (2014) Description of Domibacillus indicus sp. nov., isolated from ocean sediments and emended description of the genus Domibacillus. Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3010-5. doi: 10.1099/ijs.0.064295-0. Epub 2014 Jun 6, 64 (9). pp. 3010-3015.

Sharma , A. and Shouche, Y. (2014) Microbial Culture Collection (MCC) and International Depositary Authority (IDA) at National Centre for Cell Science,. Indian J. Microbiol. 2014 Jun;54(2):129-33. , 54 (2). pp. 129-133.

Sharma , R and Mosoh, D and Shouche , YS and Singh, SM and Naik , R (2019) Naganishia indica sp. nov. -Fungal Planet 933. Persoonia-Fungal Planet Description Sheets. Persoonia-Fungal Planet Description Sheets , 42. pp. 384-385.

Sharma , R. and Kulkarni , G. and Sonawane , M.S. and Shouche , Y.S. (2013) New record of Scedosporium dehoogii from India. Mycotaxon. , 124. pp. 239-245.

Sharma , R. and Kulkarni , G. and Shouche , Y.S. (2013) Corynascus verrucosus, second record for science and new for India. Nova Hedwigia , 97 (3-4). pp. 485-494.

Sharma , R. and Kulkarni , G. and Shouche , Y.S. (2013) Pseudofusicoccum adansoniae isolated as an endophyte from Jatropha podagrica: new record for India. Mycotaxon, 123. pp. 39-45.

Sharma , R. and Kulkarni , G. and Sonawane , M.S. and Shouche , Y.S. (2014) A new endophytic species of Arthrinium (Apiosporaceae) from Jatropha podagrica. Mycoscience,. Journal Mycoscience , 55 (2). pp. 118-123.

Sharma , R. and Kulkarni , G. and Sonawane , M.S. and Shouche , Y.S. (2013) A new endophytic species of Chaetomium from Jatropha podagrica. Mycotaxon, 124 (1). pp. 117-126.

Shetty , S.A. and Marathe , N.P. and Munot , H. and Antony, C.P. and Dhotre, D.P. and Murrell , J.C. and Shouche, Y.S. (2013) Draft Genome Sequence of Methylophaga lonarensis MPLT, a Haloalkaliphilic (Non-Methane-Utilizing) Methylotroph. Genenome Annuance, 1 (3). e00202-e002013. ISSN May/June 2013 Volume 1 Issue 3 e00202-13

Shetty , S.A. and Marathe, N.P. and Lanjekar , V. and Ranade , D. and Shouche , Y.S. (2013) Comparative Genome Analysis of Megasphaera sp. Reveals Niche Specialization and Its Potential Role in the Human Gut. PLoS One, 8 (11). e79353-e79353.

Shetty , S.A. and Marathe, N.P. and Shouche , Y.S. (2013) Opportunities and challenges for gut microbiome studies in the Indian population. Microbiome , 1 (24).

Shouche, Y.S. and Mande , S.C. (2017) Indian Human Microbiome Initiative:Indian-Ness through the Magnifying Glass. Current Science, 112 (2). pp. 207-208.

Shouche , Y.S. and Pawar , S.P and Dhotre , D.P and Shetty , S.A and Chowdhury , S.P (2012) Genome Sequence of Janibacter hoylei MTCC8307, Isolated from the Stratospheric Air. Journal of Bacteriology , 194 (23). pp. 6629-6630.

Shrivas , VL and Choudhary, AK and Shidture , S and Rambia, A and Hariprasad, P and Sharma, A and Sharma, S (2023) Organic amendments modulate the crop yield and rhizospheric bacterial community diversity: a 3-year field study with Cajanus cajan . International Microbiology.

Singh, KS and Paul, D and Gupta , A and Dhotre , D and Klawonn, F and Shouche , Y (2023) Indian sewage microbiome has unique community characteristics and potential for population-level disease predictions. Science of the Total Environment, 858 (Pt.3). p. 160178.

Singh, P and Šnokhousová, J and Saraf, A and Suradkar, A and Elster, J (2020) Phylogenetic evaluationof the genus Nostoc and description of Nostoc neudorfense sp. nov., from theCzech Republic. International Journal of Systematic and Evolutionary Microbiology. , 70 (6). doi:10.1099.

Singh, P. and Šnokhousová, J. and Saraf, A. and Suradkar, A. and Elster, J. (2020) Phylogenetic evaluation of the genus Nostoc and description of Nostoc neudorfense sp . nov ., from the Czech Republic. International Journal of Systematic and Evolutionary Microbiology. 2020 March ; 70 (4) : 2740-2749., 70 (4). pp. 2740-2749.

Singh, SM and Sharma , R and Shouche , YS (2019) Leucosporidium himalayensis sp. nov. -Fungal Planet 927. Persoonia-Fungal Planet Description Sheets 2019 June; 42:372-373. Persoonia-Fungal Planet Description Sheets, 42. pp. 372-373.

Singh , A and Husein, A and Singh, S and Ghattargi , V and Dhotre, D and Shouche, Y and Colaco , S and Abhyankar , V and Patekar, S and Chhabria, K (2022) False-positive detection of Group B Streptococcus (GBS) in chromogenic media (Strep B Carrot Broth) due to presence of Enterococcus faecalis in High Vaginal swabs. Journal of Medical Microbiology. 2022 Aug;71(8). , 71 (8).

Singh , K and Keer, A and Aakib Zed, A and Jasmeen, R and Mishra, K and Mourya, N and Paul, D and Dhotre, D and Shouche, YS (2023) High Antibiotic Resistance in Indian Sewage Shows Distinct Trends and might be Disjoint from in-situ Antibiotic Levels. Water, Air, and Soil Pollution, 234. p. 467.

Singh , KS and Singh , BP and Rokana , N and Singh, N and Kaur , J and Singh , A and Panwar , H (2021) Bio-therapeutics from Human Milk: Prospects and Perspectives. Journal of Applied Microbiology. .

Singh , P and Jani , K and Sharma, S and Rale, V and Souche, Y and Prakash , S and Jogdeo, P and Patil, Y and Dhanorkar, MN (2022) Microbial Population Dynamics in Lemnaceae (Duckweed)-Based Wastewater Treatment System. Current Microbiology, 80 (2). p. 56.

Singh , P. and Anigo, M.R. and Kunui , K. and Shaikh , Z.M. and Suradkar , A. and Shouche , Y.S. and Mishra , A.K. and Singh , S.S. (2016) A new species of Scytonema isolated from Bilaspur, Chhattisgarh, India. Journal of Systematic Evolution.

Singh , P. and Muneef, S.Z. (2016) New species of Nostoc (cyanobacteria) isolated from Pune, India, using morphological, ecological and molecular attributes. Plant Systematics and Evolution, 302 (10). pp. 1381-1394.

Singh, , P. and Minz, R.A. and Kunui, K. and Shaikh, Z.M. and Suradkar, A. and Shouche, Y.S. and Singh, S.S. (2017) A new species of Scytonema isolated from Bilaspur, Chhattisgarh, India using the polyphasic approach. Plant Systematics and Evolution, 303 (2). pp. 249-259.

Singh, , P. and Minj, R.A. and Kunui, K. and Shaikh, Z.M. and Suradkar, A. and Shouche, Y.S. and Singh, S.S. (2016) A new species of Scytonema isolated from Bilaspur, Chhattisgarh, India. Journal of Systematics and Evolution, 54 (5). pp. 519-527.

Singhvi , N and Gupta , V and Singh , P and Prakash Om,, P and Bechthold , A and Singh , Y and Lal , R (2020) Prediction of Transcription Factors and Their Involvement in Regulating Rifamycin Production in Amycolatopsis mediterranei S699. Indian Journal of Microbiology, 60 (3). pp. 310-317.

Sivaraman, GK and Gupta, SS and Visnuvinayagam, S and Muthulakshmi, T and Elangovan, R and Perumal, V and Balasubramanium, G and Lodha, T and Yadav, A (2022) Prevalence of S. aureus and/or MRSA from seafood products from Indian seafood products. BMC Microbiology, 11 (1). p. 233.

Soltanighias, T and Singh, AEA and Satpute, SK and Banpurkar, AG and Koolivand A, A and Rahi, P (2019) Assessment of biosurfactant-producing bacteria from oil contaminated soils and their hydrocarbon degradation potential. Environmental Sustainability (2). 285–296-285–296.

Sonalkar, V.V. and Mawlankar, R. and Venkata Ramana , V. and Joseph , N. and Shouche , Y.S. and Dastager, S.G. (2015) Bacillus filamentosus sp. nov., isolated from sediment sample. Antonie Van Leeuwenhoek. , 107 (2). pp. 433-441.

Soni , R. and Suyal , D.C. and Agrawal , K. and Yadav, Y. and Shouche , Y.S. and Goel , R. (2015) Differential proteomic expression of himalayan psychrotrophic diazotroph Pseudomonas palleroniana N26 under low temperature diazotrophic conditions. Cryo Letters. , 36 (2). pp. 74-82.

Soto-Cruz NO, S and Kirchmayr, MR and Sharma , A (2022) Sustainable production of ethnic alcoholic beverages. Frontiers in Sustainable Food Systems, 6. p. 59.

Spehlmann , ME and Rangrez, AY and Dhotre, DP and Schmiedel, N and Chavan, N and Bang , C and Müller, OJ and Shouche, YS and Franke, A and Frank, D and Frey, N (2022) Heart Failure Severity Closely Correlates with Intestinal Dysbiosis and Subsequent Metabolomic Alterations. Biomedicines 2022 March ; 10(4), 809, 10 (4). p. 809.

Spehlmanna, ME and Dhotre, DP and Schmiedel, N and Chavan, N and Bang , C and Rangrez, AY (2022) Dataset of ileum bacterial diversity in mice after heart failure due to pressure overload. Data in Brief. p. 108498.

Sumashri , KS. and Kirdat, K. and Yadav, V. and Natraj, S. and Janardhana, GR. and Yadav, A. (2021) First report of 16SrII group (Peanut witches' Broom) Phytoplasmas associated with the Leucas aspera Phyllody in India. Plant Diseases.

Sundararaj , R and Kirdat, K and Mondal, S and Reddy , MK and Thorat, V and Rishi , R and Yadav , A (2020) A threat to sandalwood cultivation in the naturalised Marayoor sandalwood reserve (Kerala, India) through single and mixed phytoplasma infections. Phytopathogenic Mollicutes., 10 (1). pp. 89-95.

Suradkar A, , A. and Villanueva C, , C. and Gaysina LA, , L.A. and Casamatta DA,, D.A. and Saraf A, , A. and Dig, G. and Mergu R, , R. and Singh P. , P. (2017) Nostoc thermotolerans sp. nov., a soil dwelling species of Nostoc (Cyanobacteria) isolated from Madhya Pradesh, India. International Journal of Systematic and Evolutionary Microbiology .

Suresh , G and Tushar, DL and Indu , B and Sasikala, S and Ramana , CB Taxogenomics Resolves Conflict in the Genus Rhodobacter: A Two and Half Decades Pending Thought to Reclassify the Genus Rhodobacter. Frontiers in Microbiology. . 2480 .

Suresh , G. and Tushar , L. and Indu, B. and Sasikala, CH and Ramana, Ch.V. (2020) Corrigendum: Taxogenomics resolves conflict in the genus Rhodobacter: A two and half decades pending thought to reclassify the genus Rhodobacter. Frontiers in Microbiolgy. , 11. p. 1111.

Suryavanshi , M.V. and Bhute, S.S. and Jadhav, S.D. and Bhatia , M.S. and Gune, R.P. and Shouche , Y.S. (2016) Hyperoxaluria leads to dysbiosis and drives selective enrichment of oxalate metabolizing bacterial species in recurrent kidney stone endures. Scientific Report, 6. 34712 .

Suryavanshi , M.V. and Paul, D. and Doijad , S.P. and Bhute , S.S. and Hingamire , T.B. and Gune , R.P. and Shouche , Y.S. (2017) Draft genome sequence of Lactobacillus plantarum strains E2C2 and E2C5 isolated from human stool culture. Stand Genomic Sci. 2017; 12: 15., 12 (15).

Suyal, D and Kumar , S and Joshi , D and Yadav , A and Shouche Y, Y and Goel , R (2019) Comparative overview of red kidney bean (Phaseolus valgaris) rhizospheric bacterial diversity in perspective of altitudinal variations. Biologia (Bratisl), 74. 1405–1413.-1405–1413..

Suyal , D.C. and Yadav , A. and Shouche , Y.S. and Goel, R. (2014) Differential proteomics in response to low temperature diazotrophy of Himalayan psychrophilic nitrogen fixing. Current Microbiology, 68 (4). pp. 543-550.

Suyal , D.C. and Kumar , S. and Yadav , A. and Shouche , Y. and Goel , R. (2017) Cold Stress and Nitrogen Deficiency Affected Protein Expression of Psychrotrophic Dyadobacter psychrophilus B2 and Pseudomonas jessenii MP1. Frontier Microbiology.

Tembe , S. and Shouche , Y. and Ghate , H.V. (2014) DNA barcoding of Pentatomomorpha bugs (Hemiptera: Heteroptera) from Western Ghats of India. Meta Gene. 2014 Oct 10;2:737-45., 10 (2). pp. 737-745.

Tendulkar , S and Hattiholi , A and Chavadar , M and Dodamani , S (2021) Psychrophiles: A journey of hope. Journal of Biosciences, 467 (3). p. 64.

Thombre , R.S. and Shinde , V.D. and Oke, R.S. and Dhar , S.K. and Shouche , Y.S. (2016) Biology and survival ofextremely halophilic archaeon Haloarcula marismortui RR12 isolated from Mumbaisalterns, India in response to salinity stress. Scientific Report, 6. p. 25642.

Thorat, M.N. and Mawlankar, R. and Sonalkar, V.V. and Venkata Ramana V, V. and Joseph , N. and Shouche , Y.S. and Dastager , S.G. (2015) Deinococcus enclensis sp. nov., isolated from a marine sediment sample. Antonie Van Leeuwenhoek. , 107 (1). pp. 141-148.

Thorat, V. and More, S.S. and Mane,, S. and Nandanwar, R.S. and Deshmukh, P.B. and Surayavanshi, M. and Shouche, Y.S. and Yadav, A. (2017) First Report of Association of Candidatus Phytoplasma cynodontis (16SrXI-B Group) With Streak, Yellowing, and Stunting Disease in Durum and Bread Wheat Genotypes From Central India. Plant Disease, 02-17- (PDIS-0).

Thorat, V. and More, V. and Jadhav, , P. and Mane, S.S. and Nandanwar, R.S. and Deshmukh, M. and Surayavanshi, Y. and Shouche, , Y.S. and Yadav, A. (2016) First Report of a 16SrII-D Group Phytoplasma Associated With Witches’-Broom Disease of Soybean (Glycine max) in Maharashtra, India. Plant Dieases, 100 (12). ISSN December 2016, Volume 100, Number 12

Thorat , L and Joseph , E and Nisal , A and Shukla , E and Ravikumar , A and Nath , BB (2020) Structural and physical analysis of underwater silk from housing nest composites of a tropical chironomid midge. International Journal of Biological Macromolecules, 163. pp. 934-942.

Thorat , L and Joseph , E and Nisal , A and Shukla , E and Ravikumar , A and Nath , BB (2020) Structural andphysical analysis of underwater silk from housing nest composites of a tropicalchironomid midge. International Journal of Biological Macromolecules., 163. pp. 934-942.

Thorat , V and Kirdat, K and Tiwarekar, B and Dhanavade, P and Karodi , P and Shouche , YS and Sathe, S and Lodha, T and Yadav, A (2022) Paenibacillus albicereus sp. nov. and Niallia alba sp. nov., isolated from digestive syrup. Archives of Microbiology.

Thorat , V and Kirdat, K and Tiwarekar , B and DaCosta, E and Debbarma , P and Debbarma , Y and Sathe , S and Goel , R and Lodha , T and Yadav, A (2020) Pseudomonas lalkuanensis sp. nov., isolated from a bacterial consortia of contaminated soil enriched for the remediation of e-waste. International Journal of Systematic and Evolutionary Microbiology. , 70 (2).

Thorat , V and Tiwarekar, B and Kirdat, K and Chavan , S and Markad, S and Sathe , S and Lodha, T and Yadav, A (2022) Hydrogenophaga crocea sp. nov. associated with cyanobacterial mat isolated from farmland mud. Archives of Microbiology. 2022 April ; 204 ( 265). Archives of Microbiology, 204 (265).

Tomer , S. and Suyal , D.C. and Shukla, A. and Rajwar , J. and Yadav, A. and Shouche , Y. and Goel , R. (2017) Isolation and characterization of phosphate solubilizing bacteria from Western Indian Himalayan soils. 3 Biotech (17). p. 7.

Tripathi, S. and Thorat, V. and Verma, Y. and Shouche , Y.S. and Yadav, A. (2017) First Report of ‘Candidatus Phytoplasma asteris’ (subgroup 16SrI-X) Associated with Bottle Gourd Virescence and Phyllody Disease in India. Plant Disease, 101 (11). p. 1949.

Tuikhar , N and Kirdat, K and Nair , G and Padma , S and Thorat, V and Swetha, P and Sathe, S and Sundararaj, R and Yadav, A (2022) Rothia santali sp. nov., endophytic bacteria isolated from sandalwood (Santalum album L.) seedling. Archieve of Microbiology , 204 (10). p. 609.

Van Bocxlaer , I. and Biju, S.D. and William , B and Giri, V.B. and Shouche , Y.S. and Bossuyt, F. (2012) Mountain-associated clade endemism in an ancient frog family (Nyctibatrachidae) on the Indian subcontinent. Molecular Phylogenetics and Evolution, 62. pp. 839-842.

Varshney , S and Kajale, S and Khatri, S and Gupta , D and Sharma, A and Sharma, S (2022) Temporal variation in bacterial community profile on patients’ bedsheets in a primary healthcare unit. Archives of Microbiology, 204 (308).

Vashist , P and Nogi , Y and Ghadi , SC and Verma , P, and Shouche, Y.S. (2013) Microbulbifer mangrovi sp. nov., a polysaccharide-degrading bacterium isolated from an Indian mangrove. International Journal of Systematic and Evolutionary Microbiology , 63. pp. 2532-2537.

Verma , P and Seong , C.N and Pandey , P.K and Bhonde , R.R and Seong , C. and Rohde, M. and Shouche , Y.S. (2013) Bhargavaea indica sp. nov., a Member of the Phylum Firmicutes, Isolated from Arabian Sea Sediment§. Journal of Microbiology, 51 (1). pp. 36-42.

Vipool, , T. and Bhale, U. and Sawant, V. and More, V. and Jadhav , P. and Mane, S.S. and Nandanwar , R.S. and Tripathi, S. and Yadav, A. (2016) Alternative weed hosts harbors 16SrII group phytoplasmas associated with little leaf and witches’ broom diseases of various crops in India. Phytopathogenic Mollicutes, 6 (1). pp. 50-55.

Waghmode , S. and Dama , L. and Hingamire, T. and Bharti, N. and Doijad , S. and Suryavanshi , M. (2017) Draft genome sequence of a biosurfactant producing, Bacillus aquimaris strain SAMM MCC 3014 isolated from Indian Arabian coastline sea water. J Genomics. , 5. pp. 124-127.

Walujkar , S.A. and Dhotre1 , D.P. and Marathe , N.P. and Lawate , P.S. and Bharadwaj , R.S. and Shouche , Y.S. (2014) Characterization of bacterial community shift in human Ulcerative Colitis patients revealed by Illumina based 16S rRNA gene amplicon sequencing. Gut Pathogens, 6 (22). pp. 1-10.

Wilken , PM and Aylward , J and Chand , R and Sharma , R and Yukun Sun , S and Wingfield, BD and Wingfield, MJ (2020) IMA Genome - F13- Draft genome sequences of Ambrosiella cleistominuta, Cercospora brassicicola, C. citrullina, Physcia stellaris, and Teratosphaeria pseudoeucalypti . IMA Fungus 2020 Sep 24;11:19. , 24 (11). p. 19.

Yadav, KK and Nimonkar, Y and Poddar, JB and Kovale, L and Sagar, I and Shouche, YS and Purohit, HJ and Khardenavis, AA and Green, SJ and Om Prakash, P (2022) Two-Dimensional Cell Separation: a High-Throughput Approach to Enhance the Culturability of Bacterial Cells from Environmental Samples. Microbiology Spectrum, 10 (3).

Yadav, V. and Thorat, V. and Mahadevakumar, S. and Janardhana, G.R. and Yadav, A. (2016) First Report of the Association of the 16SrII-D Phytoplasma Subgroup with Little Leaf Disease of Crotalaria in Karnataka, India. Plant Disease, 100 (12). p. 2523.

Yadav , A. and Bhale , U. and Thorat, V. and Shouche , Y.S. (2014) First report of a new subgroup 16Sr II-M 'Candidatus Phytoplasma aurantifolia' associated with witches'-broom disease of Tephrosia purpurea in India. Plant Disease , 98 (7). p. 990.

Yadav , A. and Thorat , V. and Deokule , S. and Shouche , Y. and Prasad , D.T. (2017) New subgroup 16SrXI-F phytoplasma strain associated with sugarcane grassy shoot (SCGS) disease in India. Int J Syst Evol Microbiol. 2017 Feb;67(2):374-378, 67 (2). pp. 374-378.

Yadav , M.A. and Thorat , V. and Rao , G.P. (2017) Molecular detection of 16SrI-B and 16SrII-D subgroups of phytoplasma associated with flat stem and witches' broom disease of Celosia argentea L. 3 Biotech. 2017 Oct;7(5):311., 7 (5). p. 311.

Young , JPW and Moeskjær , S and Afonin , A and Rahi , P and Tian , CF (2021) Defining the Rhizobium leguminosarum Species Complex. Genes (Basel), 12 (1). p. 111.

Zumla, A and Traore, T and Amao, L and Ntoumi, F and Sharma , A and Azhar , EI and Abbara, A (2022) Reducing the threat of epidemic-prone infections at mass gathering religious events. Lancet, 400 (10346). pp. 80-82.

Book Section

UNSPECIFIED (2015) Quorum Sensing vs Quorum Quenching: A Battle with No End in Sight. In: Kalia, Vipin Chandra , V.P. and Kalia, V.P., (eds.) Quorum Sensing vs Quorum Quenching: A Battle with No End in Sight. Springer India. ISBN 978-81-322-1981-1

Assad , R. and Reshi, ZA. and Mir , SH. and Rashid , I. and Shouche, Y. and Dhotre, D. (2021) Chapter 17 - Bioprospecting appraisal of Himalayan pindrow fir for pharmacological applications. In: Phytomedicine : A Treasure of Pharmacologically Active Products from Plants. Elsevier, pp. 461-482.

Bussas , V. and Sharma , A. and Shouche , Y. (2017) IP and the Budapest Treaty - Deposit Biological material for patent purposes. In: ‘Microbial Resources: From Functional Existence in Nature to Applications’. Ipek Kurtböke . Academic Press 2017. ISBN ISBN: 9780128047651

Chaudhuri,, S.R. and Mishra,, M. and De, S. and SamaL, B. and Saha, A. and Banerjee, S. and Chakraborty,, A. and Chakraborty, A. and Pardhiya, S. and Gola,, D. and Chakraborty, J. and Ghosh,, S. and Jangid,, K. and Mukherjee, L. and Sudarshan, M. and Nath, R. and Thakur, A.R. (2017) Microbe-based strategy for plant nutrient management. In: Biological Wastewater Treatment and Resource Recovery. Microbe-Based Strategy for Plant Nutrient Management . IntechOpen., pp. 1-55.

Chaudhuri,, S.R. and Sharmin, J. and Banerjee, S. and Jayakrishnan, U. and Saha, , A. and Mishra, M. and Ghosh, M. and Mukherjee, I. and Banerjee, A. and Jangid, K. and Sudarshan, M. and Chakraborty, A. and Nath, R and Banerjee, M. and Singh, S.S. and Saha, A.K. and Thakur , A.R (2016) Novel Microbial System Developed from Low-Level Radioactive Waste Treatment Plant for Environmental Sustenance. In: Environmental Sciences » "Management of Hazardous Wastes",. INTECH OPEN ACCESS PUBLISHER. ISBN ISBN 978-953-51

Deonalli, D. and Sharma, R. and Jangid, K. (2017) Microbial community dynamics during soil ecosystem development. In: Mining of Microbial Wealth and MetaGenomics;. Springer, pp. 57-82.

Dewala, S and Shouche, YS (2021) Chapter 8: Human microbiome’s role in disease. In: Dhanasekaran D, Paul D, Amaresan N, Sankaranarayanan A, Shouche YS (eds). Microbiome-Host Interactions. In: Microbiome-Host Interactions. CRC Press, pp. 1-10. ISBN 9781003037521

Dewala , S. and Shouche , YS. (2021) Human Microbiome’s Role in Disease. (Edited Book). In: Microbiome-Host Interact. CRC Press;. CRC Press.

Ghattargi, VC and Shouche, YS and Dhakephalkar, PK and Rao, P and Ramana, V and Dhotre, DP (2022) Probiotics: A mainstream therapy for the disease suppression. In: Comprehensive Gut Microbiota. Elsevier, pp. 257-271.

Ghattargi, , VC and Sape, K and Kumbhare, SV and Shouche, YS (2019) Mining Human Microbiome for Therapeutics. In: Microbial Diversity in Ecosystem Sustainability and Biotechnological Applications. Springer, pp. 573-613.

Ghosh, M. and Saha, A. and Jangid, K. and Joshi, A. and Chaudhuri, S.R. (2017) A polyphasic approach of species identification for genus Bacillus. In Chaudhuri, S.R. (ed), Life Science: Recent Innovations & Research. I. In: Life Science: Recent Innovations & Research. International Research Publication House, India. , India.

Kulkarni , SO and Yogesh, S and Shouche, YS (2021) Chapter 20: Mangrove Ecosystem and Microbiome. In: Microbiome-Host Interactions. CRC Press, pp. 1-19. ISBN 9780367479909

Mongad, DS and Chavan , NS and Shouche, YS (2021) Chapter 3: Computational techniques used for microbial diversity analysis. In: Microbiome-Host Interactions. CRC Press, pp. 1-15. ISBN 9781003037521

Naik, V and Rahi, P (2022) Methods for Isolation and Identification of Rhizobia. In: Practical Handbook on Agricultural Microbiology. Springer Protocols Handbooks (11). Humana Springer, New York, NY., pp. 3-14.

Pandey , A. and Sharma , A. (2021) Extreme Environments Unique Ecosystems – Amazing Microbes (Edited Book). In: Extreme Environments Unique Ecosystems – Amazing Microbes. CRC Press.

Pawar, H and Sathe, G and Patole , MS (2020) Genome-Wide Proteomics and Phosphoproteomics Analysis of Leishmania spp. During Differentiation. In: Trypanosomatids. Methods in Molecular Biology . Springer, pp. 161-176.

Prakash, O and Mahabare, K and Yadav,, K.K. and Sharma, R. (2019) Fungi from Extreme Environments: A Potential Source of Laccases Group of Extremozymes In Fungi in Extreme Environments. In: Fungi in Extreme Environments: Ecological Role and Biotechnological Significance pp 441-46. Springer, 441-462 -441-462 .

Prakash, O. and Sharma, R. and Singh, P. and Yadav, A. Strategies for Taxonomical Characterisation of Agriculturally Important Microorganisms. In: » Microbial Inoculants in Sustainable Agricultural Productivity. Microbial Inoculants in Sustainable Agricultural Productivity . Springer, pp. 85-101.

Rahi, P. (2017) Phytomicrobiome: A reservoir for sustainable agriculture. In: Mining of Microbial Wealth and MetaGenomics pp 117-132. Springer, pp. 117-132.

Satoor, S.N. and Patil, D.P. and Kristensen, H.D. and Joglekar, M.V. and Shouche , Y.S. and Hardikar , A.A. (2014) Manipulation and assessment of gut microbiome for metabolic studies. In: Mouse Genetics : Protocol. Methods in Molecular Biology, 1194 (10). Springer, New York , pp. 449-469. ISBN 978-1-4939-1214-8

Sharma, S and Mohan, S and Mane, SG and Pote , ST and Patole , MS and Sharma, R (2023) Chapter 16 - Candida: Biofilm formation and antifungal resistance. In: Understanding Microbial Biofilms Fundamentals to Applications. Academic Press Elsevier, pp. 261-273. ISBN 978-0-323-99977-9

Sharma , R. (2017) Ectomycorrhiza: Symbiotic fungal association with plant their diversity, ecology and practical applications. In: Mycorrhiza - Function, Diversity. In: Mycorrhiza - Function, Diversity, State of the Art pp 99-13. Springer, pp. 93-113.

Sharma , R. and Jangid , K. (2016) Role of Quorum Sensing in Fungal Morphogenesis and Pathogenesis. In: Fungal Metabolites. Reference Series in Phytochemistry pp 1-28 (28). Springer International Publishing, pp. 1-28. ISBN 978-3-319-19456-1

Singh , H. and Dhamale , P. and Majumdar, A. (2021) Effect of inhibition or stimulation of neurotransmission on behaviour in Drosophila. In: Experiments with Drosophila for Biology Courses. Indian Academy of Sciences, Bengaluru, India , India, pp. 511-516.

Soltanighias , T. and Singh , A.E. and Rahi, P. (2017) Mining Bacterial Diversity for Biosurfactants. In: Mining of Microbial Wealth and MetaGenomics. Springer, pp. 443-461.

Tiwari , AK and Kenro Oshima, K and Yadav , A and Esmaeilzadeh-Hosseini, SA and Hanboonsong, Y and Lakhanpaul, S (2023) Characterization, Epidemiology, and Management. In: Characterization, Epidemiology, and Management. Academic Press Elsevier. ISBN ISBN: 9780323916714