Singh , K and Keer, A and Aakib Zed, A and Jasmeen, R and Mishra, K and Mourya, N and Paul, D and Dhotre, D and Shouche, YS (2023) High Antibiotic Resistance in Indian Sewage Shows Distinct Trends and might be Disjoint from in-situ Antibiotic Levels. Water, Air, and Soil Pollution, 234. p. 467.

Tamahane, V and Bhanushali, S and Shah, N and Gupta, A and Khadilkar, V and Gondhalekar, K and Khadilkar, A and Shouche, YS (2023) comparative study of the gut microbiome in Indian children with type 1 diabetes and healthy controls. Journal of Diabetes. ISSN Wiely

Khan , KA and Ganeshprasad , DN and Sachin, HR and Shouche, YS and Hamed , A and Ghramh, HA and Sneharan, AH (2023) Gut microbial diversity in Apis cerana indica and Apis florea colonies: a comparative study. Frontiers in Veterinary Science.

Chaudhari , D and Kiran, S and Choudhary, A and Silveira, K and Narwade, N and Dhotre , D and Khazir , J and Mir , BA and Shouche, YS and Rahi, P (2023) Prokaryotic communities adapted to microhabitats on the Indian lotus (Nelumbo nucifera) growing in the high-altitude urban Dal Lake. International Microbiology, 26 (2). pp. 257-267.

Hussain , A and Patwekar, U and Mongad , DS and Shouche, YS (2022) Strategizing the human microbiome for small molecules: approaches and perspectives. Drug Discovery Today. 2022 Nov 23;103459. (103459).

Mudgil , D and Paul, D and Baskar, S and Baskar, R and Shouche, YS (2022) Cultivable microbial diversity in speleothems using MALDI-TOF spectrometry and DNA sequencing from Krem Soitan, Krem Lawbah, Krem Mawpun, Khasi Hills, Meghalaya, India. Archives of Microbiology, 204 (8). p. 495.

Chauhan, NS and Joseph, N and Shaligram, S and Chavan, N and Joshi , A and Dhotre , D and Lodha, T and Shouche, YS (2022) Paenibacillus oleatilyticus sp. nov., isolated from soil. Archives of Microbiology. pp. 204-516.

Ganeshprasad, DN and Lone, JK and Jani , K and Shouche, YS and Khan, KA and Sayed, S and Shukry, M and Showket, AD and Mushtaq, M and Sneharani, AH (2022) Gut Bacterial Flora of Open Nested Honeybee, Apis florea. Frontiers in Ecology and Evolution.

Yadav, KK and Nimonkar, Y and Poddar, JB and Kovale, L and Sagar, I and Shouche, YS and Purohit, HJ and Khardenavis, AA and Green, SJ and Om Prakash, P (2022) Two-Dimensional Cell Separation: a High-Throughput Approach to Enhance the Culturability of Bacterial Cells from Environmental Samples. Microbiology Spectrum, 10 (3).

Spehlmann , ME and Rangrez, AY and Dhotre, DP and Schmiedel, N and Chavan, N and Bang , C and Müller, OJ and Shouche, YS and Franke, A and Frank, D and Frey, N (2022) Heart Failure Severity Closely Correlates with Intestinal Dysbiosis and Subsequent Metabolomic Alterations. Biomedicines 2022 March ; 10(4), 809, 10 (4). p. 809.

Sagar, I and Nimonkar, Y and Dhotre, D and Shouche, YS and Ranade, D and Dewala, S and Om Prakash, P (2022) A Microcosm Model for the Study of Microbial Community Shift and Carbon Emission from Landfills. Indian Journal of Microbiology, 62. pp. 195-203.

Thorat , V and Kirdat, K and Tiwarekar, B and Dhanavade, P and Karodi , P and Shouche , YS and Sathe, S and Lodha, T and Yadav, A (2022) Paenibacillus albicereus sp. nov. and Niallia alba sp. nov., isolated from digestive syrup. Archives of Microbiology.

Ghattargi, VC and Shouche, YS and Dhakephalkar, PK and Rao, P and Ramana, V and Dhotre, DP (2022) Probiotics: A mainstream therapy for the disease suppression. In: Comprehensive Gut Microbiota. Elsevier, pp. 257-271.

Mongad, DS and Chavan , NS and Shouche, YS (2021) Chapter 3: Computational techniques used for microbial diversity analysis. In: Microbiome-Host Interactions. CRC Press, pp. 1-15. ISBN 9781003037521

Dewala, S and Shouche, YS (2021) Chapter 8: Human microbiome’s role in disease. In: Dhanasekaran D, Paul D, Amaresan N, Sankaranarayanan A, Shouche YS (eds). Microbiome-Host Interactions. In: Microbiome-Host Interactions. CRC Press, pp. 1-10. ISBN 9781003037521

Prakash, O and Parmar, M and Vaijanapurkar, M and Rale, V and Shouche, YS (2021) Recent trend, biases and limitations of cultivation-based diversity studies of microbes. FEMS Microbiology Letters, 368 (17).

Mane , S and Dixit, KK and Lathwal , N and Dhotre, D and Kadus, P and Shouche, YS and Bhalerao , S (2021) Rectal administration of buttermilk processed with medicinal plants alters gut microbiome in obese individuals. Journal of Diabetes & Metabolic Disorders, 20 (2). pp. 1415-1427.

Shaligram, S and Narwade, NP and Kumbhare, SV and Bordoloi , M and Tamuli, KJ and Nath, S and Parimelazhagan , T. and Patil, VS and Kapley, A. and Pawar , SP and Dhotre, DP and Muddeshwa, MG and Purohit , HJ and Shouche, YS (2021) Integrated Genomic and Functional Characterization of the Anti-diabetic Potential of Arthrobacter sp. SW1. Current Microbiology, 78. pp. 2577-2588.

Dixit , K and Davray, D and Chaudhari, D and Kadam, P and Kshirsagar, R and Shouche , YS and Dhotre, D and Saroj , SD (2021) Benchmarking of 16S rRNA gene databases using known strain sequences. Bioinformation, 17 (3). pp. 377-391.

Mane , PC and Patil , VS and Chaudhari , RD and Karodi PP, , PP and Mane , PC and Mehrotra , P and Pawar , SP and Shouche , YS and Vemuluri , VR (2021) Description and genomic insights into a multidrugresistant novel bacterium Savagea serpentis sp. nov., isolated from the scats ofa vine snake (Ahaetulla nasuta). Antonie Van Leeuwenhoek..

Dhanasekaran , D. and Paul , D. and Amaresan, N. and Sankaranarayanan , A. and Shouche , YS (2021) Microbiome-Host Interactions. In: Microbiome-Host Interactions. (Edited Book). CRC Press .

Shah , S and Chand , K and Rekadwad , B and Shouche , YS and Sharma , J and Pant , B (2021) A prospectus of plant growth promoting endophytic bacterium from orchid (Vanda cristata). BMC Biotechnolgy, 21 (1). p. 16.

Kulkarni , SO and Yogesh, S and Shouche, YS (2021) Chapter 20: Mangrove Ecosystem and Microbiome. In: Microbiome-Host Interactions. CRC Press, pp. 1-19. ISBN 9780367479909

Chaudhari , DS and Dhotre, DP and Jani, K and Sharma, A and Singh, Y and Shouche, YS and Rahi, P (2020) Bacterial Communities Associated with the Biofilms Formed in High-Altitude Brackish Water Pangong Tso Located in the Himalayan Plateau. Current Microbiology , 77 (12). pp. 4072-4084.

Hussain , A and Hassan , QP and Shouche, YS (2020) New approaches for antituberculosis leads from Actinobacteria. Drug Discovery Today, 25 (12). pp. 2335-2342.

Biju, SD and Garg, SG and Chandrakasan, S and Thammachoti, P and Ren , J and Gopika, C and Bisht, J and Hamidy , A and Shouche, YS (2020) New insights on the systematics and reproductive behaviour in tree frogs of the genus Feihyla, with description of a new related genus from Asia (Anura, Rhacophoridae). Zootaxa, 12 (1). p. 4878.

Mahajan , SG and Nandre , VS and Salunkhe, RC and Shouche, YS and Kulkarni, MV (2020) Chemotaxis and physiological adaptation of an indigenous abiotic stress tolerant plant growth promoting Pseudomonas stutzeri: Amelioration of salt stress to Cicer arietinum. Biocatalysis and Agricultural Biotechnology. Volume 27, August 2020, 101652, 27. p. 101652.

Prakash , O and Sharma, A and Shouche , YS (2020) Importance of vision, visibility and viability of Microbial Resource Centres. Current Science, 119 (4). pp. 625-631.

Chaudhari, D and Rangappa, K and Das, A and Layek, J and Basavaraj, S and Kandpal , BK and Shouche, YS and Rahi, P (2020) Pea (Pisum sativuml.) Plant Shapes Its Rhizosphere Microbiome for Nutrient Uptake and Stress Amelioration in Acidic Soils of the North-East Region of India. Frontiers in Microbiology, 11. p. 968.

Gaike , AH and Paul , D and Bhute, S and Dhotre, DP and Pande, P and Upadhyaya, S and Reddy, Y and Sampath, R and Ghosh, D and Chandraprabha, D and Acharya, J and Banerjee, G and Sinkar, VP and Ghaskadbi, SS and Shouche, YS (2020) The Gut Microbial Diversity of Newly Diagnosed Diabetics but Not ofPrediabetics Is Significantly Different from That of Healthy Nondiabetics. mSystems, 5 (2). e00578-19.

Chaudhari , DS and Dhotre , DP and Agarwal, DM and Gaike, AH and Bhalerao , D and Jadhav, P and Mongad, D and Lubree, H and Sinkar, VP and Patil , UK and Salvi , S and Bavdekar, A and Juvekar, SK and Shouche, YS (2020) Gut, oral and skin microbiome of Indian patrilineal families reveal perceptibleassociation with age. Scientific Report. , 10 (1). 5685. .

Ghattargi, , VC and Sape, K and Kumbhare, SV and Shouche, YS (2019) Mining Human Microbiome for Therapeutics. In: Microbial Diversity in Ecosystem Sustainability and Biotechnological Applications. Springer, pp. 573-613.

Shah , S and Pant, P and Sharma, R and Shouche , YS and Sharma, J (2019) Coniochaeta dendrobiicola sp. nov. -Fungal Planet 917. Persoonia-Fungal Planet Description (42). pp. 350-351.

Singh, SM and Sharma , R and Shouche , YS (2019) Leucosporidium himalayensis sp. nov. -Fungal Planet 927. Persoonia-Fungal Planet Description Sheets 2019 June; 42:372-373. Persoonia-Fungal Planet Description Sheets, 42. pp. 372-373.

Sharma , R and Mosoh, D and Shouche , YS and Singh, SM and Naik , R (2019) Naganishia indica sp. nov. -Fungal Planet 933. Persoonia-Fungal Planet Description Sheets. Persoonia-Fungal Planet Description Sheets , 42. pp. 384-385.

Patel, V. and Munot , H. and Shouche, YS and Madamwar, D. (2014) Response of bacterial community structure to seasonal fluctuation and anthropogenic pollution on coastal water of Alang-Sosiya ship breaking yard, Bhavnagar, India. Bioresour Technol . 2014 Jun;161:362-70., 161. pp. 362-370.

Dewala, S and Bodkhe, R and Nimonkar, Y and OM Prakash, OM and Ahuja , V and Makharia , GK and Shouche, YS Human small-intestinal gluten-degrading bacteria and its potential implication in celiac disease. Journal of Bioscience, 48. p. 18.