Article

Ansari , M.Y. and Mande, S.C. (2018) A Glimpse Into the Structure and Function of Atypical Type I Chaperonins. Front Mol Biosci. , 5 (31).

Arora , G. and Sajid , A. and Virmani , R. and Singhal A, A. and Santosh Kumar , C.M. and Dhasmana , N. and Khanna , T. and Maji , A. and Misra , R. and Molle, V. and Becher , D. and Ulf Gerth, U and Mande , S.C. and Singh , Y. (2017) Ser/Thr protein kinase PrkC-mediated regulation of GroEL is critical for biofilm formation in Bacillus anthracis. BPJ Biofilms and Microbiomes . ISSN doi:10.1038/s41522-017-0015-4

Assaiya , A and Burada , AP and Dhingra , S and Kumar , J (2021) An overview of the recent advances in cryo-electron microscopy for life sciences. Emerging Topics in Life Sciences.. ETLS20200295..

Bendre, AD. and Peters , PJ. and Kumar , J. (2021) Recent Insights into the Structure and Function of Mycobacterial Membrane Proteins Facilitated by Cryo-EM. Journal of Membrane Biology, 254 (3). pp. 321-341.

Bendrea , AD and Petersb, PJ and Kumar , J (2021) Tuberculosis: Past, present and future of the treatment and drug discovery research. Current Research in Pharmacology and Drug Discovery, 2. p. 100037.

Burada , AP and Vinnakota, R and Kumar , J (2020) The Architecture of GluD2 Ionotropic Delta Glutamate Receptor Elucidated by cryo-EM. Journal of Structructural Biology. , 211 (2). p. 107546.

Burada , AP and Vinnakota , R and Bharti , P and Dutta, P and Dubey , N and Kumar , J (2020) Emerging Insights into the Structure and Function of Ionotropic GluD Receptors. British Journal of Pharmacology. p. 33145757.

Chilukotia, N. and Santosh Kumar , C.M. and Mande, S.C. (2015) GroEL2 OF M. tuberculosis REVEALS THE IMPORTANCE OF STRUCTURAL PLIABILITY IN CHAPERONIN FUNCTION. Jounal of Bacteriology .

Chopra, K and Burdak, B and Sharma, K and Kembhavi , A and Mande , SC and Chauhan , R (2020) A Pipeline to Decrypt the Inter-Protein Interfaces from Amino Acid Sequence Information. Biomolecules . August 2020, 211(2) : 107546, 10 (6). p. 938.

Conde , R. and Laires, R. and Gonçalves , LG. and Rizvi, A. and Barroso, C. and Villar, M. and Macedo, R. and Simões , MJ. and Gaddam, S. and Lamosa , P. and Puchades-Carrasco L,, L. and Pineda-Lucena, A. and Patel , AB. and Mande, SC and Barnejee, S. and Matzapetakis, M. and Coelho, AV. (2021) Discovery of serum biomarkers for diagnosis of tuberculosis by NMR metabolomics including cross-validation with a second cohort. Biomedical Journal. 2021 Jul24;S2319-4170(21)00094-9. . S2319-4170.

Dutta , P. and Bharti , P. and Kumar , J. and Maiti , S. (2021) Role of actin cytoskeleton in the organization and function of ionotropic glutamate receptors. Current Research in Structural Biology, 3. pp. 277-289.

Hegde , S.R. and Pal, K. and Mande , S.C. (2014) Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions. BMC System Biology , 8 (26). pp. 1-8.

Hervás, R. and Li L , L. and Majumder , A. and Fernandez-Ramirez Mdel, C. and Unruh, J.R. and Slaughter , B.D. and Galera-Prat , A. and Santana , E. and Suzuki , M. and Nagai , Y. and Bruix, M. and Casas-Tinto, S. and Menéndez, M. and Laurents , D.V. and Si K, K. and Carrión-Vázquez, M. (2016) Molecular Basis of Orb2 Amyloidogenesis and Blockade of Memory Consolidation. PLoS One.

Kumar , Janesh (2022) Ionotropic glutamate delta receptors: The enigma has finally begun to unravel. Neuropharmacology, 207. p. 108944.

Kumari, J. and Bendre , AD. and Bhosale, S. and Vinnakota, R and Burada , AP. and Ravelli , R. and Peters , PJ. and Joshi , M. and Kumar , J. (2020) Structural dynamics of the GluK3-kainate receptor neurotransmitter binding domains revealed by cryo-EM. International Journal of Biological Macromolecules., 149. pp. 1051-1058.

Lausi, A. and Polentarutti, M. and Onesti, S. and Plaisier , J.R. and Busetto, E. and Barba , L. and Cassetta , A. and Campi , G. and Lamba , D. and Pifferi , A. and Mande , S.C and Sarma , D.D. and Sharma , G. (2015) Status of the crystallography beamlines at Elettra. The European Physical Journal Plus, 130 (43). pp. 1-8. ISSN 130:43

Mahajan, G. and Mande , S.C. (2017) Using structural knowledge in the protein data bank to inform the search for potential host-microbe protein interactions in sequence space: application to Mycobacterium tuberculosis. BMC Bioinformatics.

Mahajan , , G. and Mande, S.C. (2015) From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach. PLos One .

Mande, S.C. (2014) Early developments in crystallography. Resonance, 19 (12). pp. 1077-1086.

Mande, S.C. and Mahajan, G. and Santosh , K.C.M. (2015) Multiple Chaperonins in Bacteria - Novel functions and Non-canonical behaviors. Cell Stress and Chaperones. pp. 1-15. ISSN CSAC-D-15-00022R2 (In Press)

Mandlik , V. and Gurav , M. and Singh, S. (2015) Regulatory dynamics of network architecture and function in Tristable genetic circuit of Leishmania: A Mathematical biology Approach. J Biomol Struct Dyn. .

Meyerson , J.R. and Kumar , J. and Chittori, S. and Rao, P. and Pierson , J. and Bartesaghi , A. and Mayer, M.L. and Subramaniam , S. (2014) Structural mechanism of glutamate receptor activation and desensitization. Nature , 514 (7522). pp. 328-334.

Nilkanth , VV. and Mande , SC. Structure–sequence features based prediction of phosphosites of serine/threonine protein kinases of Mycobacterium tuberculosis. Proteins.

Permina , E.A. and Medvedeva , Y.A. and Baeck , P.M. and Hegde , S.R. and Mande , S.C. and Makeev , V.J. (2012) Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets. Journal of Biomolecular Structure and Dynamics. pp. 1-2.

Phulera, M and Mande , S.C. (2013) The Crystal Structure of Mycobacterium tuberculosis NrdH at 0.87 Å Suggests a Possible Mode of Its Activity. Biochemistry 2013, 52, 4056−4065, 52. pp. 4056-4065.

Phulera, S. and Akif, M. and Sardesai, A.A. and Shekhar , S.C. (2014) Redox Proteins of Mycobacterium tuberculosis. Journal of the Indian Institute of Science, 94 (1). pp. 127-137.

Vinnakota , R. and Dhingra, S. and Kumari , J. and Ansari , MY. and Shukla, E. and Nerkar , MD. and Kumar, J. (2021) Role of Neto1 extracellular domain in modulation of kainate receptors. International Journal of Biological Macromolecules , 192. pp. 525-536.

Book Section

Kalia, V.C. and Shouche, Y.S. and Purohit, H. and Rahi, P. (2018) Mining of Microbial Wealth and MetaGenomics. In: Mining of Microbial Wealth and MetaGenomics. Springer.

Assaiya , A and Bhar, S and Kumar, J (2022) Chapter 19 : Advances in Sample Preparation and Data Processing for Single-particle Cryo-Electron Microscopy. In: Advances in Protein Molecular and Structural Biology Methods. Methods in Molecular and Structural Biology. Methods in Molecular and Structural Biology . Academic Press Elsevier, pp. 291-309. ISBN 978-032-39-0264-9

Jyoti Kumari, J. and Surbhi Dhingra, S. and Janesh Kumar, J. Fluorescence-Based Screening of Membrane Proteins for Structural Studies. In: Shukla A. (eds) Chemical and Synthetic Approaches in Membrane Biology. In: Chemical and Synthetic Approaches in Membrane Biology. Springer Protocols Handbooks book series (SPH) . Springer, pp. 141-155.

Kumar, C.M.S. and Mande, S.C. (2017) Functional diversity in mycobacterial chaperonins: the generalists and the specialists. In: Prokaryotic Chaperonins. Heat Shock Proteins VOL. 15, 15 . Springer, pp. 67-80.

Kumar, C.M.S. and Mande, S.C. Prokaryotic Multiple Chaperonins: The Mediators of Functional and Evolutionary Diversity C. M. Santosh Kumar Pages 39-51. In: Prokaryotic Chaperonins Multiple Copies and Multitude Functions. Springer, Kumar, C. M. Santosh, Mande, Shekhar C. (, pp. 39-50. ISBN 978-981-10-4651-3

Mande, S.C. and Kumar, A. and Ghosh, P. (2013) Analysis of Dihedral Angle Variability in Related Protein Structures. In: Biomolecular Forms and Functions: A Celebration of 50 Years of the Ramachandran Map (English). Biomolecular Forms and Functions: . World Scientific Publishing, Singapore, India, pp. 107-115.

Mande , S.C. and Kumar , S.C.M. and Sharma , A. (2013) Evolution of Bacterial Chaperonin 60 Paralogues and Moonlighting Activity. In: Moonlighting Cell Stress Proteins in Microbial Infections. Heat Shock Proteins , 7 . Springer, Heat Shock Proteins Volume 7, 2013, pp 101-121 , pp. 101-121.

Rao, K. V. S and Kumar , D. and Mande , S.C. (2013) Chapter 3- Probing Gene Regulatory Networks to Decipher Host–Pathogen Interactions. In: Chapter 3- Probing Gene Regulatory Networks. Springer Science+Business Media,, pp. 37-54.