Article

Behera, S. and Reddy, RR. and Taunk, K. and Rapole, S. and Pharande, RR. and Suryawanshi , AR. (2022) Delineation of altered brain proteins associated with furious rabies virus infection in dogs by quantitative proteomics. Journal of Proteomics, 253. p. 104463.

Taunk , K. and Porto-Figueira, P. and Pereira, AMJ. and Taware, R. and Luíza da Costa , N. and Barbosa, R. and Rapole , S. (2022) Urinary Volatomic Expression Pattern: Paving the Way for Identification of Potential Candidate Biosignatures for Lung Cancer. Metabolites, 12 (1). p. 36.

Islam , S. and Dutta, P. and Chopra, C. and Sahay, O. and Rapole, S. and Chauhan , R. and Santra , MK. (2021) Co-operative binding of SKP1, Cullin1 and Cullin7 to FBXW8 results in Cullin1-SKP1-FBXW8-Cullin7 functional complex formation that monitors cellular function of β-TrCP1 . International Journal of Biological Macromolecules, 190. pp. 233-243.

Paul , D. and Rapole , S. and Santra , MK. (2021) A new player in an old story: FBXO16 prevents breast cancer tumorigenesis through disrupting cellular function of nuclear β-Catenin. Journal of Experimental Pathology, 1 (1). pp. 22-27.

Khan , MZ. and Singha , B. and Ali , MF. and Taunk, K. and Rapole, S. and Gourinath , S. and Nandicoori , VK (2021) Redox homeostasis in Mycobacterium tuberculosis is modulated by a novelactinomycete-specific transcription factor. EMBO Journal, 40 (14). e106111. .

Taware, R. and Taunk, K. and Kumar, T.V.S. and Pereira, J.A.M. and Câmara, J.S. and Nagarajaram, H.A. and Kundu, G.C. and Rapole, S. (2020) Extracellular volatilomic alterations induced by hypoxia in breast cancer cells. Metabolomics, 16 (2).

Rizvi, A. and Shankar, A. and Chatterjee, A. and More, T.H. and Bose, T. and Dutta, A. and Balakrishnan, K. and Madugulla, L. and Rapole, S. and Mande, S.S. and Banerjee, S. and Mande, S.C. (2019) Rewiring of MetabolicNetwork in Mycobacterium tuberculosis During Adaptation to Different Stresses. Frontiers in Microbiology.

Chanukuppa, V. and Paul, D. and Taunk, K. and Chatterjee, T. and Sharma, S. and Kumar, S. and Santra, M.K. and Rapole, S. (2019) XPO1 is a critical player for bortezomib resistance in multiplemyeloma: A quantitative proteomic approach. Journal of Proteomics, 209. p. 103504.

Chanukuppa, V. and More, T.H. and Taunk, K. and Taware, R. and Chatterjee, T. and Sharmad, S. and Rapole, S. (2019) Serum metabolomic alterations in multiple myeloma revealed by targeted and untargeted metabolomics approaches: a pilot study. RSC Advances, 9 (51).

Paul, D. and Islam, S. and Manne, R.K. and Dinesh, U.S. and Malonia, S.K. and Maity, B. and Boppana, R. and Rapole, S. and Shetty, P. and Santra, M.K. (2019) F-box protein FBXO16 functions as a tumor suppressor by attenuating nuclear - catenin function. Journal of Pathology, 164 (5). pp. 1433-1439.

Kiran , M. and Naveena, B.M. and Smrutirekha, M. and Baswa Reddy, P. and Rituparna, B. and Praveen Kumar , Y. and Venkatesh, C. and Rapole, S. (2019) Traditional halal slaughter without stunning versus slaughter with electrical stunning of sheep (Ovis aries). Meat Science , 148. pp. 127-136.

Chanukuppa, V. and Taware, R. and Chatterjee, T. and Sharma, S. and More, T.H. and Taunk, K. and Kumar, S. and Santra, M.K. and Rapole, S. (2018) Current understanding of the potential of proteomics andmetabolomics approaches in cancer chemoresistance: A focus on Multiple Myeloma. Current Topics in Medicinal Chemistry., 18 (30). pp. 2584-2598.

Paul, D. and Bargale, A.B. and Rapole, S. and Shetty, P.K. and Santra, M.K. (2018) Protein Phosphatase 1Regulatory Subunit SDS22 Inhibits Breast Cancer Cell Tumorigenesis by Functioningas a Negative Regulator of the AKT Signaling Pathway. Neoplasia., 21 (1). pp. 30-40.

Taware, R. and Taunk, K. and Pereira, JAM. and Shirolkar, A. and Soneji, D. and Câmara, J.S. and Nagarajaram, H.A. and Rapole, S. (2018) Volatilomic insight of head and neck cancer via the effectsobserved on saliva metabolites. Scientific Reports, 8 (1). p. 17725.

Shende, R. and Wong, S.S.W. and Rapole, S. and Beau, R. and Ibrahim-Granet, O. and Monod, M. and Gührs, K.H. and Pal, J.K. and Latgé, J.P. and Madan, T. (2018) Aimanianda V, Sahu A. Aspergillus fumigatus conidialmetalloprotease Mep1p cleaves host complement proteins. Journal of Biological Chemistry, 293 (40). pp. 15538-15555.

More, T.H. and Taware, R. and Taunk, K. and Chanukuppa, V. and Naik, V. and Mane, A. and Rapole, S. (2018) Investigation of altered urinary metabolomic profiles of invasive ductalcarcinoma of breast using targeted and untargeted approaches. Metabolomics, 14 (8). p. 107.

Vyas, N.A. and Singh, S.B. and Kumbhar, A.S. and Ranade, D.S. and Walke, G.R. and Kulkarni, P.P. and Jani, V. and Sonavane, U.B. and Joshi, R.R. and Rapole, S. (2018) Acetylcholinesterase and Aβ Aggregation Inhibition by Heterometallic Ruthenium(II)-Platinum(II) Polypyridyl Complexes. Inorganic Chemistry, 57 (13). pp. 7524-7535.

Taunk, K. and Taware, R. and More, T.H. and Porto-Figueira, P. and Pereira, JAM. and Mohapatra, R. and Soneji, D. and Camara, J.S. and Nagarajaram, H.A. and Rapole, S. (2018) A non-invasive approach to explore the discriminatory potential of the urinary volatilome of invasive ductal carcinoma of the breast. RSC Advances 2018 8 (44):25040-25050 · July 2018, 44. p. 25040.

More , T.H. and Roy Choudhury , S. and Christie, J. and Taunk, K. and Mane, A. and Santra , M.K. and Chaudhury , K. and Rapole, S. (2017) Metabolomic alterations in invasive ductal carcinoma of breast: A comprehensive metabolomic study using tissue and serum samples. Oncotarget., 9 (2). pp. 2678-2696.

Taware, R. and Taunk , K. and Pereira , JAM and Dhakne , R. and Kannan , N. and Soneji, D. and Camara, J.S. and Nagarajaram , H.A. and Rapole, S. (2017) Investigation of urinary volatomic alterations in head and neck cancer: a non-invasive approach towards diagnosis and prognosis. Metabolomics (13). p. 111.

Naveenaa, B.M. and Jagadeesh, D.S. and Babu AJ, A.J. and Rao TM, T.M. and Kamunia, V. and Vaithiyanathana , S. and Kulkarnia, V.V. and Rapole, S. (2017) OFFGEL electrophoresis and tandem mass spectrometry approach compared with DNA-based PCR method for authentication of meat species from raw and cooked ground meat mixtures containing cattle meat, water buffalo meat and sheep meat. Food Chem. 2017 Oct 15;233:311-320., 233. pp. 311-320.

Choudhury, S.R. and More , T.H. and Chattopadhyay, R. and Lodh, I. and Ray, C.D. and Bose, G. and Sarkar, H.S. and Chakravarthy , B. and Rapole, S. and Chaudhury K., K. (2017) Polycystic ovary syndrome in Indian women: a mass spectrometry based serum metabolomics approach. Metabolomics, 13 (115).

Naveena , B.M. and Jagadeesh , D.S. and Kamuni , V. and Muthukumar, M. and Kulkarni , V.V. and Kiran , M. and Rapole , S. (2017) In-gel and OFFGEL-based proteomic approach for authentication of meat species from minced meat and meat products. J Sci Food Agric. (doi: 1).

Manne, R.K. and Agrawal , Y. and Bargale, A. and Patel , A. and Paul, D. and Gupta , N.A. and Rapole , S. and Seshadri, V. and Subramanyam , D. and Shetty , P. and Santra , M.K. (2017) A MicroRNA/Ubiquitin Ligase Feedback Loop Regulates Slug-Mediated Invasion in Breast Cancer. Neoplasia, 19 (6). pp. 451-518. ISSN Volume 19, Issue 6, p451-518

Gajbhiye , A. and Dabhi , R and Taunk , K and Jagadeeshaprasad , M.G. and Roy Choudhury , S. and Mane , A. and Bayatigeri , S. and Chaudhury , K. and Santra , M.K. and Rapole , S. (2017) Multipronged quantitative proteomics reveals serum proteome alterations in breast cancer intrinsic subtypes. Journal of Proteomics, 163. pp. 1-13. ISSN Journal of Proteomics

Gollapalli , K. and Ghantasala , S. and Kumar , S. and Srivastava , R. and Rapole , S. and Moiyadi , A. and Epari , S. and Srivastava , S. (2017) Subventricular zone involvement in Glioblastoma – A proteomic evaluation and clinicoradiological correlation. Scientific Reports , 7 (1449 ).

Gollapalli , K. and Ghantasala , S. and Atak , A. and Rapole , S. and Moiyadi , A. and Epari , S. and Srivastava , S. (2017) Tissue Proteome Analysis of Different Grades of Human Gliomas Provides Major Cues for Glioma Pathogenesis. OMICS: A Journal of Integrative Biology, 21 (5). pp. 275-284. ISSN 2017 May;21(5):275-284. doi: 10.1089/omi.2017.0028.

More, T.H. and Bagadi , M. and RoyChoudhury, S. and Dutta, M. and Uppal, A. and Mane, A. and Santra, M.K. and Chaudhury, K. and Rapole , S. (2017) Comprehensive quantitative lipidomic approach to investigate serum phospholipid alterations in breast cancer. Metabolomics, 13 (3). pp. 1-14.

More , T. and Choudhury, R.S. and Gollapally, K. and Patel, S.K. and Gowda, H. and Chaudhury, K. and Rapole, S. (2016) Metabolomics and its integration with systems biology: PSI 2014 conference panel discussion report ☆. Journal of Proteomics, 127 (Part A). pp. 73-39. ISSN Volume 127, Part A, 8 September 2015, Pages 73–79

Gajbhiye, A. and Dabhi , R. and Taunk, K. and Vannuruswamy , G. and RoyChoudhury, S. and Adhav, R. and Seal , S. and Mane, A. and Santhakumari , B. and Santra, M.K. and Chaudhury , K. and Rapole, S. (2016) Urinary proteome alterations in HER2 enriched breast cancer revealed by multipronged quantitative proteomics. Proteomics, 16 (17). pp. 2403-2418.

Gajbhiye , A. and Dabhi , R. and Taunk , K. and Vannuruswamy, G. and RoyChoudhury , S. and Adhav , R. and Seal , S. and Mane , A. and Santhakumari , B. and Santra , M.K. and Chaudhury , K. and Rapole, S. (2016) Urinary proteome alterations in HER2 enriched breast cancer revealed by multipronged quantitative proteomics. Proteomics.

Paul , D. and Chanukuppa , V. and Reddy, P.J. and Taunk , K. and Adhav , R. and Srivastava , S. and Santra , M.K. and Rapole , S. (2016) Global proteomic profiling identifies etoposide chemoresistance markers in non-small cell lung carcinoma. Journal of Proteomics (138). pp. 95-105.

Ganji, R. and Dhali , S. and Rizvi, A. and Sankati , S. and Vemula, M.R. and Mahajan, G. and Rapole, S. and Banerjee, S. (2016) Proteomics approach to understand reduced clearance of mycobacteria and high viral titers during HIV–mycobacteria co-infection. Cell Microbiol., 18 (3). pp. 355-368.

Pendharkar , N. and Gajbhiye , A. and Taunk, K. and RoyChoudhury , S. and Dhali , S. and Seal , S. and Mane , A. and Abhang , S. and Santra , M.K. and Chaudhury, K. and Rapole , S. (2016) Quantitative tissue proteomic investigation of invasive ductal carcinoma of breast with luminal B HER2 positive and HER2 enriched subtypes towards potential diagnostic and therapeutic biomarkers. J Proteomics. 132:112-30. Journal of Proteomics, 132. pp. 112-130.

Ray, S. and Patel , S.K. and Venkatesh, A. and Bhave, A. and Kumar, V. and Singh, V. and Chatterjee, G. and Shah, V.G. and Sharma, S. and Renu, D. and Nafis, N. and Gandhe, P. and Gogtay , N. and Thatte, U. and Sehgal , K. and Verma, S. and Karak , A. and Khanara, D. and Talukdars , A. and Kochar , S.K. and Vijeth, S.B. and Kochar, D.K. and Rojh , D. and Varma, S.G. and Gandhi, M.N. and Rapole, S. and Patankar, S. and Srivastava, S. (2016) Clinicopathological analysis and multipronged quantitative proteomics reveal oxidative stress and cytoskeletal proteins as possible markers for severe vivax malaria. Scientific Reports (6). p. 24557.

Ginotra, Y.P. and Ramteke , S.N. and Walke, G.R. and Rapole, S. and Kulkarni, P.P. (2016) Histidine availability is decisive in ROS-mediated cytotoxicity of copper complexes of Aβ1-16 peptide. Free Radic Res. 2016;50(4):405-13. doi: 10.3109/10715762.2015.1133907. Epub 2016 Jan 28., 50 (4). pp. 405-413.

Maheswarappa , N.B. and Rani , K.U. and Kumar, Y.P. and Kulkarni, V.V. and Rapole , S. (2016) Proteomic based approach for characterizing 4-hydroxy-2-nonenal induced oxidation of buffalo (Bubalus bubalis) and goat (Capra hircus) meat myoglobins. Proteome Science, 14 (18).

Ganji , R. and Dhali , S. and Rizvi , A. and Rapole , S. and Banerjee, S. (2016) Understanding HIV-Mycobacteria synergism through comparative proteomics of intra-phagosomal mycobacteria during mono- and HIV co-infection. Scientific Report. 22060 .

Reddy, P.J. and Sinha, S. and Ray, S. and Sathe, G.J. and Chatterjee, A. and Prasad , T.S.K. and Dhali, S. and Rapole, S. and Panda, D. and Srivastava, S. (2015) Comprehensive analysis of temporal alterations in cellular proteome of Bacillus subtilis under curcumin treatment. PLoS One, 10 (4). e0120620-e0120620.

Pereira , J. and Porto-Figueira, P. and Cavaco, C. and Taunk , T. and Rapole , S. and Dhakne, R. and Nagarajaram , H. and Câmara , J.S. (2015) Breath analysis as a potential and non-invasive frontier in disease diagnosis: an overview. Metabolites, 5 (1). pp. 33-55. ISSN 5(1), 3-55;

Dutta , M. and Subramani, E. and Taunk, K. and Gajbhiye, A. and Seal, S. and Pendharkar , N. and Dhali , S. and Ray, C.D. and Lodh, I. and Chakravarty, B. and Dasgupta , S. and Rapole , S. and Chaudhury, K. (2015) Investigation of serum proteome alterations in human endometriosis. Journal of Proteomics, 114. pp. 182-196. ISSN 114:182-96.

Reddy , P.J. and Ray, S. and Sathe, G.J. and Gajbhiya, A. and Prasad, T.S. and Rapole , S. (2015) A comprehensive proteomic analysis of totarol induced alterations in Bacillus subtilis by multipronged quantitative proteomics. Journal of Proteomics, 114. pp. 247-262.

Walke, G.R. and Rapole, S. and Kulkarni , P.P. (2014) Cisplatin inhibits the formation of a reactive intermediate during copper-catalyzed oxidation of amyloid β peptide. 2014 Oct 6;53(19):10003-5, 6 (53). pp. 10003-10005.

Rao , A.A. and Patkari , M. and Reddy , P.J. and Srivastava , R. and Pendharkar , N. and Rapole , S. and Mehra , S. and Srivastava , S. (2014) Proteomic analysis of Streptomyces coelicolor in response to Ciprofloxacin challenge☆. Journal of Proteomics, 97. pp. 222-234.

Reddy , P.J. and Rao , A.A. and Malhotra, D. and Sharma , S. and Kumar, R. and Jain , R. and Gollapalli, K. and Pendharkar , N. and Rapole, S. and Srivastava , S. (2014) A Simple Protein Extraction Method for Proteomic Analysis of Diverse Biological Specimens. Current Proteomics, 10 (4). pp. 298-311.

Sancheti , P. and Bhonsle , H. and Patil , R.H. and Kulkarni , M.J. and Rapole , S. and Gade , W.N. (2013) Arsenomics of Exiguobacterium sp. PS (NCIM 5463)3. RSC Advances. pp. 1-20.

Ramteke , S.N. and Ginotra , Y.P. and Walke, G.R. and Joshi , B.N. and Kumbhar , A.S. and Rapole , S. and Kulkarni , P.P. (2013) Eff ects of oxidation on copper-binding properties of A b 1-16 peptide: A pulse radiolysis study. Free Radical Research, 47 (12). pp. 1046-1053.

Ramtekea , S.N. and Ginotraa, Y.P. and Walkea, G.R. and Joshia, B.N. and Kumbharb, A.S. and Rapole , S. and Kulkarni, P.P. (2013) Effects of oxidation on copper-binding properties of Aβ1-16 peptide: A pulse radiolysis study. Free Radical Research , 47 (12). pp. 1417-1425.

Rao , A. and Mahajan , K. and Banker , A. and Rapole , S. and Ravi , A.K. and Gosavi , S. and Zinjarde , S. (2013) Facile synthesis of size-tunable gold nanoparticles by pomegranate (Punica granatum) leaf extract: Applications in arsenate sensing. Materials Research Bulletin , 48. pp. 1166-1173.

Paul , D and Kumar , A and Gajbhiye , A and Santra , M. and Rapole, S. (2013) Mass Spectrometry-Based Proteomics in Molecular Diagnostics: Discovery of Cancer Biomarkers Using Tissue Culture. BioMed Research International, 783131. pp. 1-16.

Ginotra , Y. and Ramteke , S. and Rapole , S. and Kulkarni , P (2012) Mass Spectral Studies Reveal the Structure of Aβ1−16−Cu2+ Complex Resembling ATCUN Motif. Inorganic Chemistry, 51 (9). pp. 7960-7962.

Walke , G.R. and Ranade , D.S. and Ramteke , S.N. and Rapole , S. and Satriano , C. and Rizzarell, E. and Tomaselli, G.A. and Trusso Sfrazzetto, G. and Kulkarni PP. , P.P. Fluorescent Copper Probe Inhibiting Aβ1-16-Copper(II)-Catalyzed Intracellular Reactive Oxygen Species Production. Inorganic Chemistry.