Article

Sharma, R. and Shouche, Y.S. (2019) Diversity of Onygenalean Fungi in Keratin-Rich Habitats of Maharashtra (India) and Description of Three Novel Taxa. Mycopathologia. .

Kumbhare, S.V. and Patangia, D.V.V. and Patil, R.H. and Shouche, Y.S. and Patil, N.P. (2019) Factors influencing the gut microbiome in children: from infancy to childhood. Journal of Biosciences, 44 (2).

Suryavanshi, M.V. and Bhute, S.S. and Gune, R.P. and Shouche, Y.S. (2019) Author Correction: Functional eubacteria species along with trans-domain gut inhabitants favour dysgenicdiversity in oxalate stone disease. Scientific Reports , 9 (1). p. 7986.

Mandhania, M.H. and Paul, D. and Suryavanshi, M.V. and Sharma, L. and Chowdhury, S. and Diwanay, S.S. and Diwanay, S. and Shouche, Y.S. and Patole, M.S. (2019) Diversity and Succession of Microbiota during Fermentation of Traditional Indian Food Idli. Applied and Environmental Microbiology , 85 (13).

Kulkarni, A.S. and Kumbhare, S.V. and Dhotre, D.P. and Shouche, Y.S. (2019) Mining the Core GutMicrobiome from a Sample Indian Population. Indian Journal of Medical Microbiology , 59 (1). pp. 90-95.

Bodkhe , R and Shetty, S.A. and Dhotre, D.P. and Verma, A.K. and Bhatia, K. and Mishra, A. and Kaur, G. and Bangarusamy, D.K. and Santosh, B.P. and Perumal, R.C. and Ahuja, V. and Shouche, Y.S. and Makharia, G.K. (2019) .Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives WithAdult Celiac Disease Patients and Controls. Frontiers in Microbiology, 10 (164).

Ghosh, B. and Gaike, A.H. and Pyasi, K. and Brashier, B. and Das, V.V. and Londhe, J.D. and Juvekar, S. and Shouche, Y.S. and Donnelly, L.E. and Salvi, S.S. and Barnes, P.J. (2019) Bacterial load and defective monocyte-derived macrophage bacterial phagocytosis in biomass smoke-related COPD. European Respiratory Journal, 53 (2). p. 1702273.

Suryavanshi, M.V. and Bhute, S.S. and Gune, R.P. and Shouche, Y.S. (2018) Functional eubacteria speciesalong with trans-domain gut inhabitants favour dysgenic diversity in oxalatestone disease. Scientific. Scientific Reports, 8 (1). p. 16598.

Ghattargi, V.C. and Gaikwad, M.A. and Meti, B.S. and Nimonkar, Y.S and Dixit, K. and Prakash, O. and Shouche, Y.S. and Pawar, S.P. and Dhotre, D.P. (2018) Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains. BMC Genomics, 19 (1). p. 652.

Ghattargi, V.C. and Nimonkar, Y.S. and Burse, S.A. and Davray, D. and Kumbhare, S.V. and Shetty, S.A. and Gaikwad, M.A. and Suryavanshi, M.V. and Doijad, S.P. and Utage, B. and Sharma, O.P. and Shouche, Y.S. (2018) Genomic and physiological analyses of an indigenous strain, Enterococcus faecium 17OM39. Functional & Integrative Genomics, 18 (4). pp. 385-399.

Markande, A.R. and Vemuluri, V.R. and Shouche, Y.S. and Nerurkar, A.S. (2018) Characterization of Solibacillus silvestris strain AM1 that produces amyloid bioemulsifier. Journal of Basic Microbiology, 58 (6). pp. 523-531.

Kurli , R. and Chaudhari, D. and Pansare , A.N. and Khairnar, M. and Shouche, Y.S. and Rahi , P. (2018) Cultivable Microbial Diversity Associated With Cellular Phones. Front Microbiol. , 7 (9). p. 1229.

Walujkar, S.A. and Kumbhare, S.V. and Marathe, N.P. and Patangia, D.V. and Lawate, P.S. and Bharadwaj, R.S. and Shouche, Y.S. (2018) Molecular profiling of mucosal tissue associated microbiota inpatients manifesting acute exacerbations and remission stage of ulcerativecolitis. World Journal of Microbiology & Biotechnology., 34 (6). p. 76.

Mudgil, D. and Baskar, S and Basker, R. and Paul, D. and Shouche, Y.S. (2018) Biomineralization Potential of Bacillus subtilis, Rummeliibacillus Stabekisii and Staphylococcus Epidermidis Strains In Vitro Isolated from Speleothems, Khasi Hill Caves, Meghalaya, India. Geomicrobiology Journal , 35 (8).

Ghattargi, V.C. and Kalam, S.H. and Pandit, S.S and Pawar, S.P. and Shouche , Y.S. (2018) Survey of probiotic preparations and labeling practices in Indian market. Indian Journal of Medical Research , 36 (1). pp. 116-118.

Tripathi, S. and Thorat, V. and Verma, Y. and Shouche , Y.S. and Yadav, A. (2017) First Report of ‘Candidatus Phytoplasma asteris’ (subgroup 16SrI-X) Associated with Bottle Gourd Virescence and Phyllody Disease in India. Plant Disease, 101 (11). p. 1949.

Kumbhare , S.V. and Kumar , H. and Chowdhury , S.P. and Dhotre , D.P. and Endo , A. and Mättö , J. and Ouwehand , A.C. and Rautava , S. and Joshi , R. and Patil NP, N.P. and Patil , R.H. and Isolauri , E. and Bavdekar , A.R. and Salminen , S. and Shouche , Y.S. (2017) A cross-sectional comparative study of gut bacterial community ofIndian and Finnish children. Sci Rep. , 7 (1). p. 10555.

Adebayo , A.S. and Suryavanshi , M.V. and Bhute , S. and Agunloye , A.M. and Isokpehi , R.D. and Anumudu , C. and Shouche , Y.S. (2017) The microbiome in urogenital schistosomiasis and induced bladder pathologies. PLoS Negl Trop Dis., 11 (8). e0005826..

Adebayo , A.S. and Suryavanshi , M.A. and Bhute , S. and Agunloye , A.M. and Isokpehi , R.D. and Anumudu , C.L. and Shouche , Y.S. (2017) The microbiome in urogenital schistosomiasis and induced bladderpathologies. PLoS Negl Trop Dis. , 11 (11). e0006067.

Rahi , P. and Kurli , R. and Khairnar , M. and Jagtap , S. and Pansare , A.N. and Dastager , S.G. and Shouche , Y.S. (2017) Description of Lysinibacillus telephonicus sp. nov., isolated from the screen of a cellular phone. Int J Syst Evol Microbiol. (67). pp. 2289-2295. ISSN 67: 2289-2295

Gaikwad , S.S. and Shouche , Y.S. and Gade, W.N. (2017) Deep Sequencing Reveals Highly Variable Gut Microbial Composition of Invasive Fish Mossambicus Tilapia (Oreochromis mossambicus) Collected from Two Different Habitats. Indian Journal of Microbiology, 57 (2). pp. 235-240.

Prakash , O. and Nimonkar , Y. and Chavadar , M.S. and Bharti , N. and Pawar , S. and Sharma , A. and Shouche , Y.S. (2017) Optimization of Nutrients and Culture Conditions for Alkaline Protease Production Using Two Endophytic Micrococci: Micrococcus aloeverae and Micrococcus yunnanensis. Indian J Microbiol. , 57 (2). pp. 218-225.

Narayana, S. and Mohanraju,, R. and Singh, , P. and Thamke,, V. and Tapase,, S. and Shouche, Y.S. and Kodam, K. (2017) New record of a bloom forming, genotoxic strain Nodularia strain (KT447209) from Andaman and Nicobar Islands, India. Chemosphere, 174. pp. 315-320.

Thorat, V. and More, S.S. and Mane,, S. and Nandanwar, R.S. and Deshmukh, P.B. and Surayavanshi, M. and Shouche, Y.S. and Yadav, A. (2017) First Report of Association of Candidatus Phytoplasma cynodontis (16SrXI-B Group) With Streak, Yellowing, and Stunting Disease in Durum and Bread Wheat Genotypes From Central India. Plant Disease, 02-17- (PDIS-0).

Bhute , S.S. and Suryavanshi , M.V. and Joshi , S.M. and Yajnik , C.S. and Shouche , Y.S. and Ghaskadbi , S.S. (2017) Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes. Front. Microbiol..

Singh, , P. and Minz, R.A. and Kunui, K. and Shaikh, Z.M. and Suradkar, A. and Shouche, Y.S. and Singh, S.S. (2017) A new species of Scytonema isolated from Bilaspur, Chhattisgarh, India using the polyphasic approach. Plant Systematics and Evolution, 303 (2). pp. 249-259.

Sharma , A. and Paul , D. and Dhotre , D. and Jani , K. and Pandey , A. and Shouche , Y.S. (2017) Deep sequencing analysis of bacterial community structure of Soldhar hot spring, India. Microbiology, 86 (1). pp. 136-142.

Prakash , O. and Muduli , S. and Kumar , R. and Nimonkar Y5, Shouche, Y. and Shouche, Y.S. (2017) Description of Auricoccucs indicus gen. nov., sp. nov., isolated from skin of human ear. International Journal of Systematic and Evolutionary Microbiology.

Suryavanshi , M.V. and Paul, D. and Doijad , S.P. and Bhute , S.S. and Hingamire , T.B. and Gune , R.P. and Shouche , Y.S. (2017) Draft genome sequence of Lactobacillus plantarum strains E2C2 and E2C5 isolated from human stool culture. Stand Genomic Sci. 2017; 12: 15., 12 (15).

Shouche, Y.S. and Mande , S.C. (2017) Indian Human Microbiome Initiative:Indian-Ness through the Magnifying Glass. Current Science, 112 (2). pp. 207-208.

Banskar, S. and Bhute, S.S. and Suryavanshi , M.V. and Punekar, S. and Shouche, Y.S. (2016) Microbiome analysis reveals the abundance of bacterial pathogens in Rousettus leschenaultii guano. Scientific Report, 15 (6). p. 36948.

Suryavanshi , M.V. and Bhute, S.S. and Jadhav, S.D. and Bhatia , M.S. and Gune, R.P. and Shouche , Y.S. (2016) Hyperoxaluria leads to dysbiosis and drives selective enrichment of oxalate metabolizing bacterial species in recurrent kidney stone endures. Scientific Report, 6. 34712 .

Charan, S.S and Pawar, K.D. and Gavhale , S.D. and Tikhe , C.V. and Charan , N.S. and Angel , B. and Joshi , V. and Patole, M.S. and Shouche , Y.S. (2016) Comparative analysis of midgut bacterial communities in three aedine mosquito species from dengue-endemic and non-endemic areas of Rajasthan, India. Med Vet Entomol. , 30 (3). pp. 264-277.

Shaligram, S. and Kumbhare, S.V. and Dhotre, D.P. and Muddeshwar , M.G. and Kapley, A. and Joseph, N. and Purohit , H.P. and Shouche, Y.S. and Pawar, S.P. (2016) Genomic and functional features of the biosurfactant producing Bacillus sp. AM13. Funct Integr Genomics, 16 (5). pp. 557-566. ISSN 2016 Sep;16(5):557-66

Marathe, N.P. and Gaikwad, S.S. and Vaishampayan , A.A. and Rasane, M.H. and Shouche, Y.S. and Gade, W.N. (2016) Mossambicus tilapia (Oreochromis mossambicus) collected from water bodies impacted by urban waste carries extended-spectrum beta-lactamases and integron-bearing gut bacteria. Journal of Bioscience, 41 (3). pp. 341-346.

Imran, M. and Saida, B. and Ghadi, S.C. and Verma, P. and Shouche, Y.S. (2016) The gut-associated Klebsiella sp. of the apple snail produces multiple polysaccharide degrading enzymes. Current Science, 110 (11). pp. 2170-2172.

Thombre , R.S. and Shinde , V.D. and Oke, R.S. and Dhar , S.K. and Shouche , Y.S. (2016) Biology and survival ofextremely halophilic archaeon Haloarcula marismortui RR12 isolated from Mumbaisalterns, India in response to salinity stress. Scientific Report, 6. p. 25642.

Singh , P. and Anigo, M.R. and Kunui , K. and Shaikh , Z.M. and Suradkar , A. and Shouche , Y.S. and Mishra , A.K. and Singh , S.S. (2016) A new species of Scytonema isolated from Bilaspur, Chhattisgarh, India. Journal of Systematic Evolution.

Raghuwanshi , S. and Riedel, S. and Hein, C. and Agarwal, T. and Zaidi, M.G.H. and Yadav, A. and Shouche, Y.S. and Goel , R. (2016) Selection of Poly(R)-3-hydroxybutyric acid utilizing bacteria by enrichment, optimization and compatibility testing for consortia development. Chemistry and Ecology , 32 (6). 583-597 .

Paul, D. and Kumbhare , S.Y. and Mhatre S.S. , S.S and Chowdhary S.P., S.P. and Shetta , S.A. and Marathe N.P., N.P and Bhute , S. and Shouche , Y.S. (2016) Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock. Frontier in Microbiology .

Marathe , N.P. and Shetty , S.A. and Shouche, Y.S. and Larsson, D.G. (2016) Limited Bacterial Diversity within a Treatment Plant Receiving Antibiotic-Containing Waste from Bulk Drug Production. PLoS One. , 11 (11). e0165914-e0165914.

Kulkarni , G.J. and Shetty, S. and Dharne , M.S. and Shouche , Y.S. (2015) Genome sequencing analysisreveals virulence-related gene content of Ochrobactrum intermedium strain 229E, aurease-positive strain isolated from the human gastric niche. FEMS Microbiology Letters . , 359 (1). pp. 12-15. ISSN 2014 Oct;359(1):12-5.

Kumbhare , S.V. and Dhotre , D.P. and Dhar , S.K. and Jani, K. and Apte , D.A. and Shouche, Y.S. and Sharma, A. (2015) Insights into diversity and imputed metabolic potential of bacterial communities in the continental. PLoS One (DOI:10). pp. 1-15. ISSN PLOS ONE | DOI:10.1371/journal.pone.0129864 June 11, 2015 1 / 14

Dastager , S.G. and Mawlankar, R. and Mual , P. and Verma, A. and Krishnamurthi , S. and Joseph , N. and Shouche, Y.S. (2015) Bacillus encimensis sp. nov. isolated from marine sediment. Int J Syst Evol Microbiol. , 65 (5). pp. 1421-1425.

Patil , V.S. and Salunkhe, R.C. and Patil, R.H. and Husseneder, C. and Shouche , Y.S. and Venkata Ramana , V. (2015) Enterobacillus tribolii gen. nov., sp. nov., a novel member of the family Enterobacteriaceae, isolated from the gut of a red flour beetle,. Antonie Van Leeuwenhoek., 107 (5). 1207-1216..

Polkade, A.V. and Ramana, V.V. and Joshi , A. and Pardesi, L. and Shouche, Y.S. (2015) Rufibacter immobilis sp. nov., isolated from a high-altitude saline. Int J Syst Evol Microbiol, 65 (5). pp. 1592-1597.

Pandey , P.K. and Verma, P. and Marathe, N. and Shetty, S. and Bavdekar, A. and Patole, M.S. and Stensvold , C.R. and Shouche , Y.S. (2015) Prevalence and subtype analysis of Blastocystis in healthy Indian individuals. Infection, Genetics and Evolution, 31. pp. 296-299.

Chandel , K. and Parikh, R.Y. and Mendki, M.J. and Shouche, Y.S. and Veer, V. (2015) Isolation andcharacterization of Vagococcus sp from midgut of Culex quinquefasciatus (Say)mosquito. J Vector Borne Dis. , 52 (1). pp. 52-57.

Sonalkar, V.V. and Mawlankar, R. and Venkata Ramana , V. and Joseph , N. and Shouche , Y.S. and Dastager, S.G. (2015) Bacillus filamentosus sp. nov., isolated from sediment sample. Antonie Van Leeuwenhoek. , 107 (2). pp. 433-441.

Thorat, M.N. and Mawlankar, R. and Sonalkar, V.V. and Venkata Ramana V, V. and Joseph , N. and Shouche , Y.S. and Dastager , S.G. (2015) Deinococcus enclensis sp. nov., isolated from a marine sediment sample. Antonie Van Leeuwenhoek. , 107 (1). pp. 141-148.

Paramasiva, I. and Shouche, Y.S. and Kulkarni, G.J. and Krishnayya, P.V. and Akbar , S.M. and Sharma , H.S. (2014) Diversity in gut microflora of Helicoverpa armigera populations from different regions in relation to biological activity of Bacillus thuringiensis δ-endotoxin Cry1Ac. ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY, 87 (4). pp. 201-2013. ISSN 87(4):201-13

Mahale , K.N. and Paranjape, P.S. and Marathe , N.P. and Dhotre, D.P. and Chowdhury, S. and Shetty, S.A. and Sharma, K. and Tuteja, U. and Sharma , A. and Batra , H.V. and Shouche , Y.S. (2014) Draft Genome Sequences of Yersiniapestis Strains from the 1994 Plague Epidemic of Surat and 2002 Shimla Outbreak in India. Indian Journal of Microbiology, 54 (4). pp. 480-482.

Prakash, O. and Nimonkar , Y. and Munot, H. and Sharma, A. and Vemuluri , V.R. and Chavadar, M.S. and Shouche, Y.S. (2014) Description of Micrococcus aloeverae sp. nov., an endophytic actinobacterium isolated from Aloe vera. Int. J. Syst. Evol. Microbiol. , 64 (10). p. 3427.

Sharma , A. and Dhar, S.K. and Prakash, O. and Vemuluri, V.R. and Thite , V. and Shouche , Y.S. (2014) Description of Domibacillus indicus sp. nov., isolated from ocean sediments and emended description of the genus Domibacillus. Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3010-5. doi: 10.1099/ijs.0.064295-0. Epub 2014 Jun 6, 64 (9). pp. 3010-3015.

Salunkhe, R.C. and Narkhede, K.P. and Shouche , Y.S. (2014) Distribution and evolutionary impact of wolbachia on butterfly hosts. Indian J Microbiol. , 54 (3). pp. 249-254.

Prakash , O. and Prakash , P.K. and Kulkarni, G.L. and Mahale , K.N. and Shouche , Y.S. (2014) Technicalities and Glitches of Terminal Restriction Fragment Length Polymorphism (T-RFLP). Indian Journal of Microbiology, 54 (3). pp. 255-261.

Dastager, S.G. and Mawlankar, R. and Krishnamurthi , S. and Ramana, V.V. and Tang, S.K. and Joseph , N. and Shouche, Y.S. (2014) Rhodococcus enclensis sp. nov., a novel member of the genus Rhodococcus. 2014 Aug;64(Pt 8):2693-9. , 64 (8). pp. 2693-2696.

Dastager, S.G. and Mawlankar, R. and Srinivasan, K. and Tang, S.K. and Lee , J.C. and Ramana, V.V. and Shouche, Y.S. (2014) Fictibacillus enclensis sp. nov., isolated from marine sediment. Antonie van Leeuwenhoek, 3. pp. 461-469.

Dastager , S.G. and Mawlankar , R. and Tang , S.K. and Srinivasan , K. and Ramana , V.V. and Shouche, Y.S. (2014) Bacillus enclensis sp. nov., isolated from sediment sample. Antonie van Leeuwenhoek, 105. pp. 199-206.

Walujkar , S.A. and Dhotre1 , D.P. and Marathe , N.P. and Lawate , P.S. and Bharadwaj , R.S. and Shouche , Y.S. (2014) Characterization of bacterial community shift in human Ulcerative Colitis patients revealed by Illumina based 16S rRNA gene amplicon sequencing. Gut Pathogens, 6 (22). pp. 1-10.

Prakash , O. and Munot , H. and Nimonkar, Y. and Sharma, M. and Kumbhare, S. and Shouche , Y.S. (2014) Description of Pelistega indica sp. nov., isolated from human gut. International Journal of Systematic and Evolutionary Microbiology, 64. pp. 1389-1394.

Ahanger , S.H. and Günther , K. and Weth, O. and Bartkuhn , M. and Bhonde , R.R. and Shouche , Y.S. and Renkawitz , R. (2014) Ectopically tethered CP190 induces large-scale chromatin decondensation. Scientific Report, 4 (3917). pp. 1-10. ISSN 4 : 3917

Yadav , A. and Bhale , U. and Thorat, V. and Shouche , Y.S. (2014) First report of a new subgroup 16Sr II-M 'Candidatus Phytoplasma aurantifolia' associated with witches'-broom disease of Tephrosia purpurea in India. Plant Disease , 98 (7). p. 990.

Marathe , N.P. and Shetty , S.A. and Lanjekar , V.B. and Rasane , M.H. and Ranade , D.R. and Shouche , Y.S. (2014) Genome sequencing of multidrug resistant novel Clostridium sp. BL8 reveals its potential for pathogenicity. Gut Pathogens , 6 (30). pp. 1-5.

Sharma , R. and Kulkarni , G. and Sonawane , M.S. and Shouche , Y.S. (2014) A new endophytic species of Arthrinium (Apiosporaceae) from Jatropha podagrica. Mycoscience,. Journal Mycoscience , 55 (2). pp. 118-123.

Shetty , S.A. and Marathe, N.P. and Lanjekar , V. and Ranade , D. and Shouche , Y.S. (2013) Comparative Genome Analysis of Megasphaera sp. Reveals Niche Specialization and Its Potential Role in the Human Gut. PLoS One, 8 (11). e79353-e79353.

Chandel , K. and Mendki , M.J. and Parikh , R.Y. and Kulkarni , G. and Tikar , S.N. and Sukumaran , D. and Shouche , Y.S. and Veer , V. (2013) Midgut Microbial Community of Culex quinquefasciatus Mosquito Populations from India. PLoS One , 8 (11). e80453-e80453. ISSN November 2013 | Volume 8 | Issue 11 | e80453

Kolekar , Y.M. and Pawar , S.P. and Zheng , L. and Adav , S.S. and Li W, and Shouche , Y.S. and Dastager , S.G. and Kodam , K.M. (2013) Alishewanella solinquinati sp. nov., Isolated from Soil Contaminated with Textile Dyes. Current Microbiology, 67 (4). pp. 454-459. ISSN October 2013, Volume 67, Issue 4, pp 454-459

Marathe , N.P. and Regina , V.P. and Walujkar , S.A. and Charan , S.S. and Moore , E.R. and Larsson , D.G. and Shouche , Y.S. (2013) A Treatment Plant Receiving Waste Water from Multiple Bulk Drug Manufacturers Is a Reservoir for Highly Multi-Drug Resistant Integron-Bearing Bacteria (Open Access Journal). PLoS One, 8 (10). e77310-e77310.

Sharma , R. and Kulkarni , G. and Sonawane , M.S. and Shouche , Y.S. (2013) A new endophytic species of Chaetomium from Jatropha podagrica. Mycotaxon, 124 (1). pp. 117-126.

Charan , S.S. and Pawar , K.D. and Severson , D.W. and Patole , M.S. and Shouche , Y.S. (2013) Comparative analysis of midgut bacterial communities of Aedes aegypti mosquito strains varying in vector competence to dengue virus. Parasitol Res. , 112 (7). pp. 2627-2637.

Gokhale , K. and Patil , D.P. and Dhotre , D.P. and Dixit , R. and Mendki , M.J. and Patole , M.S. and Shouche , Y.S. (2013) Transcriptome analysis of Anopheles stephensi embryo using expressed sequence tags. Journal of Bioscience, 38 (2). pp. 301-309.

Sanuth, H.A. and Yadav, A. and Fagade, O.E. and Shouche, Y.S. (2013) Utilization by Proteus sp. and Bordetella sp. Isolated From Solid Waste Dumpsites in Lagos State, Nigeria, First Report. Indian J Microbiol. , 53 (2). pp. 221-226.

Shetty , S.A. and Marathe , N.P. and Munot , H. and Antony, C.P. and Dhotre, D.P. and Murrell , J.C. and Shouche, Y.S. (2013) Draft Genome Sequence of Methylophaga lonarensis MPLT, a Haloalkaliphilic (Non-Methane-Utilizing) Methylotroph. Genenome Annuance, 1 (3). e00202-e002013. ISSN May/June 2013 Volume 1 Issue 3 e00202-13

Prakash , O. and Shouche , Y.S. and Jangid , K and Kostka , J.E (2013) Microbial cultivation and the role of microbial resource centers in the omics era. Appl Microbiol Biotechnol , 97 (1). pp. 51-62.

Verma , P and Seong , C.N and Pandey , P.K and Bhonde , R.R and Seong , C. and Rohde, M. and Shouche , Y.S. (2013) Bhargavaea indica sp. nov., a Member of the Phylum Firmicutes, Isolated from Arabian Sea Sediment§. Journal of Microbiology, 51 (1). pp. 36-42.

Sharma , R. and Kulkarni , G. and Shouche , Y.S. (2013) Corynascus verrucosus, second record for science and new for India. Nova Hedwigia , 97 (3-4). pp. 485-494.

Ahanger , S.H and Shouche , Y.S. and Mishra, R.K (2013) Functional sub-division of the Drosophila genome via chromatin looping The emerging importance of CP190. Nucleus , 4 (2). pp. 115-122.

Jaokar , T.M. and Patil , D.P. and Shouche , Y.S. and Gaikwad , S.M. and Suresh , C.G. (2013) Human mitochondrial NDUFS3 protein bearing Leigh syndrome mutation is more prone to aggregation than its wild-type. Biochimie , 95. pp. 2392-2403.

Marathe , N.P. and Rasane, M.H. and Kumar, H. and Patwardhan , A.A. and Shouche , Y.S. and Diwanay , S.S. (2013) In vitro antibacterial activity of Tabernaemontana alternifolia (Roxb) stem bark aqueous extracts against clinical isolates of methicillin resistant Staphylococcus aureus. Annals of Clinical Microbiology and Antimicrobials , 26 (12). pp. 1-12.

Antony , P.C and Kumaresan , D and Hunger , S and Drake, H.L and Murrell , J and Shouche , Y.S. (2013) Microbiology of Lonar Lake and other soda lakes. The ISME Journal , 7. pp. 468-476.

Vashist , P and Nogi , Y and Ghadi , SC and Verma , P, and Shouche, Y.S. (2013) Microbulbifer mangrovi sp. nov., a polysaccharide-degrading bacterium isolated from an Indian mangrove. International Journal of Systematic and Evolutionary Microbiology , 63. pp. 2532-2537.

Sharma , R. and Kulkarni , G. and Sonawane , M.S. and Shouche , Y.S. (2013) New record of Scedosporium dehoogii from India. Mycotaxon. , 124. pp. 239-245.

Shetty , S.A. and Marathe, N.P. and Shouche , Y.S. (2013) Opportunities and challenges for gut microbiome studies in the Indian population. Microbiome , 1 (24).

Prakash , O and Nimonkar , Y and Shouche , Y.S. (2013) Practice and prospects of microbial preservation. FEMS Microbiol Lett , 339. pp. 1-9.

Sharma , R. and Kulkarni , G. and Shouche , Y.S. (2013) Pseudofusicoccum adansoniae isolated as an endophyte from Jatropha podagrica: new record for India. Mycotaxon, 123. pp. 39-45.

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